not really i want this in dynamic manner, sometimes I need icd9 and other times I need 10. if there is a way to specify exactly which scheme it should work with.
like I have a webservice that sometimes it should return icd9 and other times icd10 based on the request. modifying the xml wont do the trick. On Tue, Feb 14, 2017 at 4:33 PM, Finan, Sean < sean.fi...@childrens.harvard.edu> wrote: > Go into resources/org/apache/ctakes/dictionary/lookup/fast/ and edit your > xml configuration file. Comment out the 2 lines that have icd9 listed as > desired schemes. That should do it. > > The configuration file basically tells ctakes what is in your dictionary > database. If you comment those lines then it will think that there is no > icd9 table in your database. It won't bother to look up icd9 codes or > store icd9 codes in the cas. So, icd9 codes will not be in the array - no > filtering is necessary and the iteration is shorter. > > Sean > > -----Original Message----- > From: Alaa al Barari [mailto:alaa.albar...@gmail.com] > Sent: Tuesday, February 14, 2017 9:29 AM > To: dev@ctakes.apache.org > Subject: Re: passing information through pipleline.process > > Thanks for your answer! > > Do you want ctakes to never find codes from certain schemes during > processing? yes exactly this is what I am shooting for, if I dont need > them at the moment I dont want them found. suppose I have icd10 and icd9, I > want it to not find icd9 when I am looking for 10 and nice versa. > > > On Tue, Feb 14, 2017 at 4:13 PM, Finan, Sean < > sean.fi...@childrens.harvard.edu> wrote: > > > Hi Alaa, > > > > I have a question for you. Do you want ctakes to never find codes > > from certain schemes during processing? Or do you want it to find > > them, but only return them when you request them explicitly after > processing? > > > > > can I override process(final JCas jcas) > > That depends. If you are subclassing an AE that declares it final you > > cannot override it. If it is declared final then there may be a > > reason. In that case use composition. If you need help, web search > > "composition over inheritance". You may want to use composition anyway > ... > > > > > its from UIMA library right > > Very close. Process( JCas ) is from UimaFit while process (CAS ) is > > from uima. Web search UimaFit or go to uima.apache.org for more > information. > > > > > how can I pass an information like final ConceptCode ... > > > createConcepts( > > final Collection<Long> cuiCodes, final ConceptCode > > conceptCode) > > Now you are getting into the fast-dictionary-lookup code that is in > > ctakes. You probably don't want to override this. Look at my > > question above. What I am getting at is, if you only want ctakes to > > maintain a small list of schemes then you should just change the > > dictionary configuration file instead of delving into coding. The > > configuration file is xml and lists the schemes in your database, one > > per line. Just comment out the schemes that you don't want. > > > > As for a faster way to get codes of a different scheme, you are pretty > > much out of luck. This is because the uima cas stores everything in > > an array. To get items of interest ctakes has to go through the array > > and filter out whatever you don't want. We try to do that as > > efficiently as possible, but we are tied to this array storage mechanism. > > > > Sean > > > > > > > > -----Original Message----- > > From: Alaa al Barari [mailto:alaa.albar...@gmail.com] > > Sent: Monday, February 13, 2017 3:40 AM > > To: dev@ctakes.apache.org > > Subject: passing information through pipleline.process > > > > Hi, > > > > I have around 16 different schemes, and the way I see it through > > ctakes, it gets the information for all schemes then filter the un > > wanted ones afterwards, this is a performance concern for me, so I am > > trying to modify ctakes to suite my needs. > > > > can I override process(final JCas jcas) if yes then where and how ? > > its from UIMA library right ? if not how can I pass an information > > like final ConceptCode from pipeline.process to createConcepts, my > > createConcepts now look like below : > > createConcepts( final Collection<Long> cuiCodes, final ConceptCode > > conceptCode) ? > > > > -- > > Eng Alaa Al-Barari > > phone 0599297470 > > > > > > -- > Eng Alaa Al-Barari > phone 0599297470 > -- Eng Alaa Al-Barari phone 0599297470
