Hi Shahid,
You will definitely find instances where the old dictionary finds terms but the 
fast does not, and vice-versa.  The fast lookup uses a more concise dictionary, 
and the concepts that you noted are probably not in it.  There is another 
thread between myself and Pratik Agarwal (last week in fact) on exactly the 
topic of drugs identified generically or with dose, route, form, etc.  That may 
be why you don’t see everolimus 2.5 mg specifically.
Everolimus is in the dictionary by itself:
sql> select * from cui_terms where text like '%everolimus%';
   CUI  RINDEX  TCOUNT  TEXT        RWORD
------  ------  ------  ----------  ----------
541315       0       1  everolimus  everolimus

The reason why everolimus was not identified by itself is because it was given 
the part of speech “DT” (Determiner), which is specified as unwanted for 
lookup.  In my test with “… given everolimus 2.5 MG …”:
WordToken

begin

12

end

16

tokenNumber

2

partOfSpeech

VBD

capitalization

0

numPosition

0

WordToken

begin

17

end

27

tokenNumber

3

partOfSpeech

DT

capitalization

0

numPosition

0

MeasurementAnnotation

begin

28

end

34

id

0

typeID

0

discoveryTechnique

0

polarity

0

uncertainty

0

conditional

false

generic

false

historyOf

0



  “DT” normally is assigned to things like “the, a, these” and at some point 
the community decided that words with the DT part of speech should not be 
considered as candidates for dictionary lookup.  
http://www.clips.ua.ac.be/pages/mbsp-tags
The default exclusion parts of speech are:

 
“VB,VBD,VBG,VBN,VBP,VBZ,CC,CD,DT,EX,IN,LS,MD,PDT,POS,PP,PP$,PRP,PRP$,RP,TO,WDT,WP,WPS,WRB”
To change this, set the parameter “exclusionTags” to this string without DT.

As for “higher testosterone levels”, are you running the LVG (Lexical Variant 
Generator) module?  “testosterone level” is in the dictionary, but the plural 
“testosterone levels” is not. This is done on purpose to keep the database 
small.  The old dictionary may not have the same tactic.
sql> select * from cui_terms where text like 'testosterone level%';
   CUI  RINDEX  TCOUNT  TEXT                RWORD
------  ------  ------  ------------------  ------------
523912       0       2  testosterone level  testosterone

The LVG module –should- add the plural as a variant and the lookup module will 
use that variant for lookup.  The dictionary module (and others) does not stand 
on its own – its success depends upon the proper output of previous modules in 
the pipeline.  When I test with “… higher testosterone level …” (without LVG) 
it does find what you are looking for:
WordToken

begin

18

end

24

tokenNumber

4

partOfSpeech

JJR

capitalization

0

numPosition

0

ProcedureMention

begin

25

end

43

id

0

codingScheme

SNOMEDCT

code

104957004

score

0.0

disambiguated

false

cui

C0523912

tui

T059

preferredText

Testosterone measurement

typeID

5

discoveryTechnique

1

polarity

0

uncertainty

0

conditional

false

generic

false

historyOf

0

MedicationMention

begin

25

end

37

id

0

codingScheme

SNOMEDCT

code

109033004

score

0.0

disambiguated

false

cui

C0039601

tui

T121

preferredText

Testosterone

codingScheme


I just ran through with LVG and LVG does not form “level” from “levels”.

I hope that helps,
Sean

From: shahid ashraf [mailto:sha...@trialx.com]
Sent: Tuesday, January 24, 2017 10:17 AM
To: Finan, Sean
Cc: dev@ctakes.apache.org; kant2...@googlemail.com; pratik agarwal
Subject: Re: Ctakes Dictionary Gui

Hi Sean

I am testing the stuff on the fast and AggregratePlainTextUMLSProcessor(slow) . 
I found that one of the drug  everolimus 2.5 mg is not found by the fast 
version. it is actually in RXNORM of my MRCONSO.RRF file.
C2920405|ENG|P|L9442487|PF|S11732013|Y|A18083986|3277628|998191||RXNORM|SBD|998191|everolimus
 2.5 MG Oral Tablet [Afinitor]|0|N|4352|. Let me know if you have any inputs on 
this.
Also other case is :
SENTENCE: higher testosterone levels

            JJR        NN       NNS

                  |==========|

                   Procedure

                    C0202227

                    C0523912

                  |==========|

                      Drug

                    C0039601

 AggregratePlainTextUMLSProcessor is able to find from higher testosterone 
levels:

testosterone levels

<refsem:UmlsConcept xmi:id="167" codingScheme="SNOMED" code="104957004" 
oid="104957004#SNOMED" score="0.0" disambiguated="false" cui="C0523912" 
tui="T059"/>

C0523912|ENG|S|L0865889|PF|S1044605|Y|A3209597|1219087010|104957004||SNOMEDCT_US|SY|104957004|Testosterone
 level|9|N|256|

I am not able to understand why fast version is not able to do so.


MoreOver in comparison to Metamap, we are not able to do this.
Phrase: higher testosterone levels
Meta Mapping (966):
   966   C1295653:High testosterone level (Increased testosterone level) 
[Finding]

On Tue, Jan 24, 2017 at 8:19 PM, Finan, Sean 
<sean.fi...@childrens.harvard.edu<mailto:sean.fi...@childrens.harvard.edu>> 
wrote:
Hi Shahid,

I’m glad that the fix worked!
Unfortunately, the fast dictionary format will not work with the old Dictionary 
Lookup Module that is used by AggregratePlainTextUMLSProcessor
You can manually create an updated dictionary for the older module, but it is 
more involved.
In our tests and those done by others the new “fast” lookup has as good or 
better accuracy depending upon the test corpus.  Plus it is runs in 1/500th the 
time.  I recommend that you stick to it.

Sean

From: shahid ashraf [mailto:sha...@trialx.com<mailto:sha...@trialx.com>]
Sent: Tuesday, January 24, 2017 5:50 AM
To: Finan, Sean
Cc: dev@ctakes.apache.org<mailto:dev@ctakes.apache.org>; 
kant2...@googlemail.com<mailto:kant2...@googlemail.com>; pratik agarwal

Subject: Re: Ctakes Dictionary Gui

Thanks Sean

That was the case for not finding the class. there were space in the xml 
generated by dictionary-gui.
Also i am curious how we can use new umls with normal 
AggregratePlainTextUMLSProcessor.


On Mon, Jan 23, 2017 at 9:36 PM, Finan, Sean 
<sean.fi...@childrens.harvard.edu<mailto:sean.fi...@childrens.harvard.edu>> 
wrote:
Ah – there might be an erroneous space in the classname.

Go to your dictionary settings xml. In the line:
      
<implementationName>org.apache.ctakes.dictionary.lookup2.concept.JdbcConceptFactory</implementationName>

Look for a space between “JdbcConceptFactory” and “</implementationName>”
If you see a space, remove it.

It looks like I introduced this bug a few weeks ago.

Thanks,
Sean


From: shahid ashraf [mailto:sha...@trialx.com<mailto:sha...@trialx.com>]
Sent: Saturday, January 21, 2017 1:42 PM
To: dev@ctakes.apache.org<mailto:dev@ctakes.apache.org>; Finan, Sean; 
kant2...@googlemail.com<mailto:kant2...@googlemail.com>; pratik agarwal
Subject: Re: Ctakes Dictionary Gui

Have put username and password (umls) in custom.xml as well. Still getting this 
error:
1/22/17 12:09:18 AM - 14: 
org.apache.uima.tools.cvd.MainFrame.handleException(526): SEVERE: 
Initialization of annotator class 
"org.apache.ctakes.dictionary.lookup2.ae<https://urldefense.proofpoint.com/v2/url?u=http-3A__lookup2.ae&d=DwMFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=LaGFaTnSoKexqlXkoxOvEuIP-e7Ktmu3vKI0ZckDzcA&s=WaHWxD5eLKHj4eMgOkvTvzUiNAHAZybtjddO0KE2jgI&e=>.DefaultJCasTermAnnotator"
 failed.  (Descriptor: 
file:/usr/local/apache-ctakes-3.2.2/desc/ctakes-dictionary-lookup-fast/desc/analysis_engine/UmlsLookupAnnotator.xml)
org.apache.uima.resource.ResourceInitializationException: Initialization of 
annotator class 
"org.apache.ctakes.dictionary.lookup2.ae<https://urldefense.proofpoint.com/v2/url?u=http-3A__lookup2.ae&d=DwMFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=LaGFaTnSoKexqlXkoxOvEuIP-e7Ktmu3vKI0ZckDzcA&s=WaHWxD5eLKHj4eMgOkvTvzUiNAHAZybtjddO0KE2jgI&e=>.DefaultJCasTermAnnotator"
 failed.  (Descriptor: 
file:/usr/local/apache-ctakes-3.2.2/desc/ctakes-dictionary-lookup-fast/desc/analysis_engine/UmlsLookupAnnotator.xml)
at 
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
at 
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at 
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at 
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at 
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at 
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at 
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at 
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at 
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:354)
at org.apache.uima.tools.cvd.MainFrame.setupAE(MainFrame.java:1484)
at org.apache.uima.tools.cvd.MainFrame.loadAEDescriptor(MainFrame.java:476)
at 
org.apache.uima.tools.cvd.control.AnnotatorOpenEventHandler.actionPerformed(AnnotatorOpenEventHandler.java:52)
at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022)
at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2346)
at 
javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
at javax.swing.AbstractButton.doClick(AbstractButton.java:376)
at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:833)
at com.apple.laf.AquaMenuItemUI.doClick(AquaMenuItemUI.java:157)
at 
javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:877)
at java.awt.Component.processMouseEvent(Component.java:6525)
at javax.swing.JComponent.processMouseEvent(JComponent.java:3324)
at java.awt.Component.processEvent(Component.java:6290)
at java.awt.Container.processEvent(Container.java:2234)
at java.awt.Component.dispatchEventImpl(Component.java:4881)
at java.awt.Container.dispatchEventImpl(Container.java:2292)
at java.awt.Component.dispatchEvent(Component.java:4703)
at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4898)
at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4533)
at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4462)
at java.awt.Container.dispatchEventImpl(Container.java:2278)
at java.awt.Window.dispatchEventImpl(Window.java:2750)
at java.awt.Component.dispatchEvent(Component.java:4703)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
at java.awt.EventQueue.access$500(EventQueue.java:97)
at java.awt.EventQueue$3.run(EventQueue.java:709)
at java.awt.EventQueue$3.run(EventQueue.java:703)
at java.security.AccessController.doPrivileged(Native Method)
at 
java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
at 
java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:86)
at java.awt.EventQueue$4.run(EventQueue.java:731)
at java.awt.EventQueue$4.run(EventQueue.java:729)
at java.security.AccessController.doPrivileged(Native Method)
at 
java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
at 
java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
at 
java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
at 
java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
Caused by: org.apache.uima.resource.ResourceInitializationException: EXCEPTION 
MESSAGE LOCALIZATION FAILED: java.util.MissingResourceException: Can't find 
resource for bundle java.util.PropertyResourceBundle, key Unknown class 
org.apache.ctakes.dictionary.lookup2.concept.JdbcConceptFactory
at 
org.apache.ctakes.dictionary.lookup2.ae<https://urldefense.proofpoint.com/v2/url?u=http-3A__lookup2.ae&d=DwMFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=LaGFaTnSoKexqlXkoxOvEuIP-e7Ktmu3vKI0ZckDzcA&s=WaHWxD5eLKHj4eMgOkvTvzUiNAHAZybtjddO0KE2jgI&e=>.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:132)
at 
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
... 55 more
Caused by: org.apache.uima.analysis_engine.annotator.AnnotatorContextException: 
EXCEPTION MESSAGE LOCALIZATION FAILED: java.util.MissingResourceException: 
Can't find resource for bundle java.util.PropertyResourceBundle, key Unknown 
class org.apache.ctakes.dictionary.lookup2.concept.JdbcConceptFactory
at 
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseConceptFactory(DictionaryDescriptorParser.java:255)
at 
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseConceptFactories(DictionaryDescriptorParser.java:226)
at 
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:133)
at 
org.apache.ctakes.dictionary.lookup2.ae<https://urldefense.proofpoint.com/v2/url?u=http-3A__lookup2.ae&d=DwMFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=LaGFaTnSoKexqlXkoxOvEuIP-e7Ktmu3vKI0ZckDzcA&s=WaHWxD5eLKHj4eMgOkvTvzUiNAHAZybtjddO0KE2jgI&e=>.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:130)
... 56 more
Caused by: java.lang.ClassNotFoundException: 
org.apache.ctakes.dictionary.lookup2.concept.JdbcConceptFactory
at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Class.java:264)
at 
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseConceptFactory(DictionaryDescriptorParser.java:253)
... 59 more


On Sat, Jan 21, 2017 at 5:36 PM, shahid ashraf 
<sha...@trialx.com<mailto:sha...@trialx.com>> wrote:
Hi I was able to run and produce the new custom umls files. and where put under 
ctakes binary (not dev).

I changed the name under 
apache-ctakes-3.2.2/desc/ctakes-dictionary-lookup-fast/desc/analysis_engine/UmlsLookupAnnotator.xml

<name>DictionaryDescriptorFile</name>
            <description/>
            <fileResourceSpecifier>
               
<fileUrl>file:org/apache/ctakes/dictionary/lookup/fast/custom.xml</fileUrl>

when running AggregatePlantextFastUmlsProcessor.xml  I am getting following 
error (not when using old 
org/apache/ctakes/dictionary/lookup/fast/cTakesHsql.xml)

5: org.apache.uima.tools.cvd.MainFrame.handleException(526): SEVERE: 
Initialization of annotator class 
"org.apache.ctakes.dictionary.lookup2.ae<https://urldefense.proofpoint.com/v2/url?u=http-3A__lookup2.ae&d=DwMFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=LaGFaTnSoKexqlXkoxOvEuIP-e7Ktmu3vKI0ZckDzcA&s=WaHWxD5eLKHj4eMgOkvTvzUiNAHAZybtjddO0KE2jgI&e=>.DefaultJCasTermAnnotator"
 failed.  (Descriptor: 
file:/usr/local/apache-ctakes-3.2.2/desc/ctakes-dictionary-lookup-fast/desc/analysis_engine/UmlsLookupAnnotator.xml)
org.apache.uima.resource.ResourceInitializationException: Initialization of 
annotator class 
"org.apache.ctakes.dictionary.lookup2.ae<https://urldefense.proofpoint.com/v2/url?u=http-3A__lookup2.ae&d=DwMFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=LaGFaTnSoKexqlXkoxOvEuIP-e7Ktmu3vKI0ZckDzcA&s=WaHWxD5eLKHj4eMgOkvTvzUiNAHAZybtjddO0KE2jgI&e=>.DefaultJCasTermAnnotator"
 failed.  (Descriptor: 
file:/usr/local/apache-ctakes-3.2.2/desc/ctakes-dictionary-lookup-fast/desc/analysis_engine/UmlsLookupAnnotator.xml)
at 
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
at 
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at 
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at 
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at 
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at 
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at 
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at 
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at 
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:354)
at org.apache.uima.tools.cvd.MainFrame.setupAE(MainFrame.java:1484)
at org.apache.uima.tools.cvd.MainFrame.loadAEDescriptor(MainFrame.java:476)
at 
org.apache.uima.tools.cvd.control.AnnotatorOpenEventHandler.actionPerformed(AnnotatorOpenEventHandler.java:52)
at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022)
at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2346)
at 
javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
at javax.swing.AbstractButton.doClick(AbstractButton.java:376)
at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:833)
at com.apple.laf.AquaMenuItemUI.doClick(AquaMenuItemUI.java:157)
at 
javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:877)
at java.awt.Component.processMouseEvent(Component.java:6525)
at javax.swing.JComponent.processMouseEvent(JComponent.java:3324)
at java.awt.Component.processEvent(Component.java:6290)
at java.awt.Container.processEvent(Container.java:2234)
at java.awt.Component.dispatchEventImpl(Component.java:4881)
at java.awt.Container.dispatchEventImpl(Container.java:2292)
at java.awt.Component.dispatchEvent(Component.java:4703)
at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4898)
at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4533)
at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4462)
at java.awt.Container.dispatchEventImpl(Container.java:2278)
at java.awt.Window.dispatchEventImpl(Window.java:2750)
at java.awt.Component.dispatchEvent(Component.java:4703)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
at java.awt.EventQueue.access$500(EventQueue.java:97)
at java.awt.EventQueue$3.run(EventQueue.java:709)
at java.awt.EventQueue$3.run(EventQueue.java:703)
at java.security.AccessController.doPrivileged(Native Method)
at 
java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
at 
java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:86)
at java.awt.EventQueue$4.run(EventQueue.java:731)
at java.awt.EventQueue$4.run(EventQueue.java:729)
at java.security.AccessController.doPrivileged(Native Method)
at 
java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
at 
java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
at 
java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
at 
java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
Caused by: org.apache.uima.resource.ResourceInitializationException: EXCEPTION 
MESSAGE LOCALIZATION FAILED: java.util.MissingResourceException: Can't find 
resource for bundle java.util.PropertyResourceBundle, key Unknown class 
org.apache.ctakes.dictionary.lookup2.concept.JdbcConceptFactory
at 
org.apache.ctakes.dictionary.lookup2.ae<https://urldefense.proofpoint.com/v2/url?u=http-3A__lookup2.ae&d=DwMFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=LaGFaTnSoKexqlXkoxOvEuIP-e7Ktmu3vKI0ZckDzcA&s=WaHWxD5eLKHj4eMgOkvTvzUiNAHAZybtjddO0KE2jgI&e=>.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:132)
at 
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
... 55 more
Caused by: org.apache.uima.analysis_engine.annotator.AnnotatorContextException: 
EXCEPTION MESSAGE LOCALIZATION FAILED: java.util.MissingResourceException: 
Can't find resource for bundle java.util.PropertyResourceBundle, key Unknown 
class org.apache.ctakes.dictionary.lookup2.concept.JdbcConceptFactory
at 
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseConceptFactory(DictionaryDescriptorParser.java:255)
at 
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseConceptFactories(DictionaryDescriptorParser.java:226)
at 
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:133)
at 
org.apache.ctakes.dictionary.lookup2.ae<https://urldefense.proofpoint.com/v2/url?u=http-3A__lookup2.ae&d=DwMFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=LaGFaTnSoKexqlXkoxOvEuIP-e7Ktmu3vKI0ZckDzcA&s=WaHWxD5eLKHj4eMgOkvTvzUiNAHAZybtjddO0KE2jgI&e=>.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:130)
... 56 more
Caused by: java.lang.ClassNotFoundException: 
org.apache.ctakes.dictionary.lookup2.concept.JdbcConceptFactory
at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Class.java:264)
at 
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseConceptFactory(DictionaryDescriptorParser.java:253)
... 59 more

--
with Regards
Shahid Ashraf



--
with Regards
Shahid Ashraf



--
with Regards
Shahid Ashraf



--
with Regards
Shahid Ashraf

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