Thanks very much Sean. Didn't work unfortunately - but I am curious if
you don't personally use the CPE, how to you batch process documents?
I would like to just run the AggregatePlaintextFastUMLSProcessor.xml on
all files in a given directory - perhaps with *some* control over the
output filenames.
Thanks,
Arron.
On Fri, 20 Jan, 2017 at 4:38 PM, Finan, Sean
<sean.fi...@childrens.harvard.edu> wrote:
Hi Arron Lacey,
That particular cas consumer java class is a uimafit-paradigm
implementation, and from my memory the CPE gui does not play well
with Uimafit. I could be wrong - I never use the cpe anymore.
You might be able to get things working by changing line #23 in the
.xml file from
<implementationName>org.apache.ctakes.core.cc.XmiWriterCasConsumerCtakes</implementationName>
To
<implementationName>org.apache.uima.tools.components.XmiWriterCasConsumer</implementationName>
As far as I know the ctakes version is the same as the uima version
but with better output file naming and a uimafit framing.
Again, I'm not certain that the problem is cpe : uimafit
incompatibility. If somebody else out there knows better then please
speak up.
Good luck,
Sean
-----Original Message-----
From: Arron Lacey [mailto:a.s.la...@swansea.ac.uk]
Sent: Friday, January 20, 2017 11:13 AM
To: dev@ctakes.apache.org
Subject: Cannot load XMIWriterCasConsumer.xml with CPE.sh
Hi - I am trying to use the CPI to output results using the CAS
Consumer: __XmiWriterCasConsumer.xml
but here is the error message I am getting:
org.apache.uima.resource.ResourceInitializationException
CausedBy: org.apache.uima.resource.ResourceConfigurationException
CausedBy: java.lang.Exception: The component XMI Writer CAS Consumer
cannot be created (Thread name: Thread-4)
My setup is using:
Collection Reader
desc/ctakes-core/desc/collection_reader/FilesInDirectoryCollectionReader.xml
Analysis Engine
desc/ctakes-clinical-pipeline/desc/analysis_engine/AggregatePlaintextFastUMLSProcessor.xml
CAS Consumer
desc/ctakes-core/desc/cas_consumer/__XmiWriterCasConsumer.xml
I can get the normal XML writer to work, so I would like to ask what I
need to do to my pipeline to use the XMI Writer?
Thanks very much,
Arron Lacey.
