There were some previous posts on this list about a cTAKES web demo, I think you can see it at http://healthnlp.github.io/examples/
Regards, Tomasz ________________________________________ From: Zuo Yiming [yiming...@gmail.com] Sent: Wednesday, December 07, 2016 2:29 PM To: dev@ctakes.apache.org Subject: Re: How to use cTAKES from command line to process only one file instead of all files in a directory? Hi Tomasz, Thanks for your suggestion. I'm running cTAKES under a windows server so I guess the mktemp command may not be directly available to me. But I get the idea. What worries me most is the loading time of cTAKES. You mentioned running cTAKES behind a web service. Do you mind talking more about it? Is it possible to pre-load cTAKES on the server and only trigger it to process the document when the user sends a request? I believe this will significantly reduce the response time if successful. Best, Yiming On Wed, Dec 7, 2016 at 3:15 PM, Tomasz Oliwa <ol...@uchicago.edu> wrote: > Provided you are under Linux, you could just write a bash script that > takes your input file as argument, creates a temporary directory with > "mktemp -d", "cp" the file into it, and then runs a Java class that calls > org.apache.uima.examples.cpe.SimpleRunCPE on this temporary directory. > > The init and class loading times will the same as before, as cTAKES needs > to load its classes and models prior to any annotations. You might be more > interested in running cTAKES behind a web service, but this depends on your > use cases. > > Regards, > Tomasz > > ________________________________________ > From: Zuo Yiming [yiming...@gmail.com] > Sent: Wednesday, December 07, 2016 1:44 PM > To: u...@ctakes.apache.org; dev@ctakes.apache.org > Subject: How to use cTAKES from command line to process only one file > instead of all files in a directory? > > Hi guys, > > Is there any suggestion on using cTAKES to process one specific text file > from command line? > > I was able to follow Tsung-Ting Kuo's post on stackoverflow as shown below > to apply cTAKES in a batch mode to process all files in a folder from > command line. But the initiation time and processing time are quite long, > and all I need is to process one file submitted from user's side. So I > think there should be something similar > to org.apache.uima.examples.cpe.SimpleRunCPE to process only one file > using > cTAKES but get stuck and can't move on. Can anyone help me out? > > Tsung-Ting Kuo's post on stackoverflow: > http://stackoverflow.com/questions/32939527/how-to-use- > ctakes-from-the-command-line > > Best, > Yiming > -- > Yiming Zuo <https://sites.google.com/site/yimingzuo/> > Georgetown U. Medical Center: > Dr. Ressom's Omics Lab <http://omics.georgetown.edu/> > ECE Department of Virginia Tech: > Computational Bioinformatics & Bio-imaging Laboratory > <http://www.cbil.ece.vt.edu/> >
