Yeah, I'm actually building a 2015AB version this very moment. I am going to do a little testing and then I'll check it into sourceforge. When I'm done I'll email the link.
Sean -----Original Message----- From: David Kincaid [mailto:kincaid.d...@gmail.com] Sent: Tuesday, December 08, 2015 12:47 PM To: dev@ctakes.apache.org Subject: Re: ctakes with icd10 This seems like a pretty common request and with such an old version of UMLS database shipped with cTAKES it's only going to get worse. I've been wanting to build a dictionary using the latest UMLS release (as well as a custom database), so would be happy to write up the steps as I go through it. That assumes that I can dig up the instructions in the dev list. - Dave On Tue, Dec 8, 2015 at 11:36 AM, Finan, Sean < sean.fi...@childrens.harvard.edu> wrote: > Hi Alaa, > > The -shortest- answer is that you'll need to run the dictionary > creation tool. There are instructions in older devlist threads. By > default the dictionary creation tool does add icd9 and icd10 tables to the > dictionary. > The problem is that in Umls 2011AB those codes weren't very well > populated. The 2015AB icd# set is much more rich so those tables > should be pretty good. Then in ctakes you would look up annotations > by icd9 or icd10 codes instead of by cui: > OntologyConceptUtil.getAnnotationsByCode( jcas, lookupWindow, icd#Code > ); OntologyConceptUtil.getAnnotationsByCode( jcas, icd#Code ); > > Sean > > -----Original Message----- > From: Savova, Guergana [mailto:guergana.sav...@childrens.harvard.edu] > Sent: Tuesday, December 08, 2015 12:17 PM > To: dev@ctakes.apache.org > Subject: RE: ctakes with icd10 > > Hi Alaa, > You need to create a resource off the terminology/ontology you want to > use (in this case ICD9 or ICD10). Then run that resource with cTAKES > for the fast dictionary lookup. There is cTAKES code and some > documentation on how to create that resource. By default, cTAKES runs > with a resource created from the English version of SNOMED CT and RxNORM. > Hope this helps. > --Guergana > > -----Original Message----- > From: Alaa al Barari [mailto:alaa.albar...@gmail.com] > Sent: Tuesday, December 8, 2015 10:01 AM > To: dev@ctakes.apache.org > Subject: ctakes with icd10 > > Hi, > > I downloaded Latest umls version, and I want to know how to make > ctakes work with icd10 and icd9. > > > Thanks >
