I got the same error.Please verify your UMLS license settings in the
DictionaryLookupAnnotatorUMLS.xml configuration.
Although I'm able to connect to UMLS via the website using my user name and
password. Any idea ?
Thanks
On Monday, May 11, 2015 5:44 PM, "Finan, Sean"
<[email protected]> wrote:
Hi Pedro,
Check the cTakesHsql.xml and make sure that the line matches:
<property key="umlsUrl"
value="https://uts-ws.nlm.nih.gov/restful/isValidUMLSUser"/>
In an older version of cTAKES with an output message as you have:
>>11 May 2015 15:59:47 INFO AbstractJCasTermAnnotator - Default - Loading
>>dictionary into memory. Initial run may take few mins to load. Please be
>>patient...
That line got corrupted.
Sean
-----Original Message-----
From: Pedro Teixeira [mailto:[email protected]]
Sent: Monday, May 11, 2015 5:30 PM
To: [email protected]
Subject: UMLS Authentication failing despite correct username and password
So I've checked the Dictionary lookup XML file and that password works to log
in via the website. This was also working last week but stopped at some point
over the last week. I've got cTAKES running on a linux system so I can index
batches of documents via a script. The exact error is as follows (with the
username/password blocked out).
11 May 2015 15:59:26 INFO LvgCmdApiResourceImpl - cwd =
/home/PT/cTAKES/apache-ctakes-3.2.1
11 May 2015 15:59:26 INFO LvgCmdApiResourceImpl - cd
/home/PT/cTAKES/apache-ctakes-3.2.1/resources/org/apache/ctakes/lvg/
11 May 2015 15:59:27 INFO LvgCmdApiResourceImpl - cd
/home/PT/cTAKES/apache-ctakes-3.2.1
11 May 2015 15:59:27 INFO ClearNLPDependencyParserAE - using Morphy analysis?
true Loading configuration.
Loading feature templates.
Loading lexica.
Loading model:
........................................................................................
11 May 2015 15:59:42 INFO Chunker - Chunker model file:
org/apache/ctakes/chunker/models/chunker-model.zip
11 May 2015 15:59:44 INFO ContextDependentTokenizerAnnotator - Finite state
machines loaded.
11 May 2015 15:59:44 INFO ConstituencyParser - Initializing parser...
11 May 2015 15:59:46 INFO ContextAnnotator - SCOPE ORDER: [1, 3]
11 May 2015 15:59:46 INFO NegationContextAnalyzer - initBoundaryData() called
for ContextInitializer
11 May 2015 15:59:47 INFO POSTagger - POS tagger model file:
org/apache/ctakes/postagger/models/mayo-pos.zip
11 May 2015 15:59:47 INFO AbstractJCasTermAnnotator - Default - Loading
dictionary into memory. Initial run may take few mins to load. Please be
patient...
11 May 2015 15:59:47 INFO AbstractJCasTermAnnotator - Using dictionary lookup
window type: org.apache.ctakes.typesystem.type.textspan.Sentence
11 May 2015 15:59:47 INFO AbstractJCasTermAnnotator - Exclusion tagset
loaded: CC CD DT EX IN LS MD PDT POS PP PP$ PRP PRP$ RP TO VB VBD VBG VBN VBP
VBZ WDT WP WPS WRB
11 May 2015 15:59:47 INFO AbstractJCasTermAnnotator - Using minimum term text
span: 3
11 May 2015 15:59:47 INFO DictionaryDescriptorParser - Parsing dictionary
specifications:
/home/PT/cTAKES/apache-ctakes-3.2.1/resources/org/apache/ctakes/dictionary/lookup/fast/cTakesHsql.xml
11 May 2015 15:59:48 ERROR UmlsUserApprover - UMLS Account at
https://urldefense.proofpoint.com/v2/url?u=https-3A__uts-2Dws.nlm.nih.gov_restful_isValidUMLSUser&d=BQIBaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=oVzYGAl69NhMu6lQpKeatJrIGk2o_z2AZvjq7Z5J69g&s=_JNevHgYhyKm5PjIyFlYxIS1UWuR7J-n5V551hou2dM&e=
is not valid for user ######### with ###################### Couldn't
initialize processing engine.
Initialization of CAS Processor with name
"AggregatePlaintextFastUMLSProcessor" failed.
I also have a test implementation on a local windows 8 laptop that also fails
now due to the same error so it seems like it's UMLS related issue but I
haven't heard back from them yet and was hoping perhaps someone with cTAKES has
previously experienced and resolved the issue.
Thanks!
