The error is caused by not finding the required properties files/xml config files. There are some issues with the ytex setup scripts for the 3.2 release; I have fixed that in trunk. I am updating the 3.2 installation guide with the patched setup scripts.
It's not clear to me if you're running from a dev environment/eclipse, or running from the ctakes distro. If running from a development environment, see https://svn.apache.org/repos/asf/ctakes/trunk/ctakes-ytex/README If running from the ctakes distro, make sure you follow the ytex setup: https://cwiki.apache.org/confluence/display/CTAKES/YTEX+Installation For the dev environment, the xml config file is in the ctakes-ytex-res ( https://svn.apache.org/repos/asf/ctakes/trunk/ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/uima/beanRefContext.xml ) For the binary distro, the xml config files are in lib\ctakes-ytex-res-3.2.0.jar -vj On Fri, Oct 10, 2014 at 10:56 PM, David Kincaid <kincaid.d...@gmail.com> wrote: > I don't have that file anywhere either. Where do I get it from? > > On Fri, Oct 10, 2014 at 3:53 PM, Chen, Pei <pei.c...@childrens.harvard.edu > > > wrote: > > > I think it’s in ctakes-ytex-res.jar (is that in your classpath)? > > This is just a guess… vj may have a better idea if it still doesn’t work > > for you. > > > > From: David Kincaid [mailto:kincaid.d...@gmail.com] > > Sent: Friday, October 10, 2014 4:51 PM > > To: u...@ctakes.apache.org > > Subject: Re: NPE with ytex in ctakes 3.2.0 > > > > No. I have no file named beanRefContext.xml anywhere on my hard drive. > > > > > > > > On Fri, Oct 10, 2014 at 3:45 PM, Chen, Pei < > pei.c...@childrens.harvard.edu > > <mailto:pei.c...@childrens.harvard.edu>> wrote: > > I’m not too familiar with the ytex component, > > but my guess is that the ytexApplicationContext bean is null? > > It seems that it would be expected to be in the > > classpath*:org/apache/ctakes/ytex/uima/beanRefContext.xml? Do those > exists? > > > > From: David Kincaid [mailto:kincaid.d...@gmail.com<mailto: > > kincaid.d...@gmail.com>] > > Sent: Friday, October 10, 2014 4:23 PM > > To: u...@ctakes.apache.org<mailto:u...@ctakes.apache.org> > > Subject: NPE with ytex in ctakes 3.2.0 > > > > I'm trying to experiment the ytex in 3.2.0. Trying to run > > AggregatePlaintextUMLSProcessor with the FilesInDirectoryCollectionReader > > and FileWriterCASConsumer. When I try to run it against some text files > it > > blows up with a null pointer exception during initialization. Here's the > > relevant part of the stack trace. Anyone have any ideas what I might have > > wrong?: > > > > Caused by: org.apache.uima.resource.ResourceInitializationException: > > Initialization of annotator class > > "org.apache.ctakes.ytex.uima.annotators.SegmentRegexAnnotator" failed. > > (Descriptor: > > > file:/home/davek/apps/apache-ctakes-3.2.0/desc/ctakes-ytex-uima/desc/analysis_engine/SegmentRegexAnnotator.xml) > > at > > > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252) > > at > > > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156) > > at > > > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94) > > at > > > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62) > > at > > org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) > > at > > > org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387) > > at > > > org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254) > > at > > > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431) > > at > > > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375) > > at > > > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185) > > at > > > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94) > > at > > > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62) > > at > > org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) > > at > > org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:314) > > at > > > org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:425) > > at > > > org.apache.uima.collection.impl.cpm.container.CPEFactory.produceIntegratedCasProcessor(CPEFactory.java:1088) > > ... 9 more > > Caused by: java.lang.NullPointerException > > at > > > org.apache.ctakes.ytex.uima.ApplicationContextHolder.getApplicationContext(ApplicationContextHolder.java:79) > > at > > > org.apache.ctakes.ytex.uima.annotators.SegmentRegexAnnotator.initialize(SegmentRegexAnnotator.java:64) > > at > > > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250) > > ... 24 more > > > > > > >
