John, I am in the initial stages of my project and I'll take whatever dataset you are able to provide without spending a lot of effort extracting it.
Thanks. Ajay Sent from my iPhone > On Sep 30, 2014, at 5:22 AM, "John Green" <john.travis.gr...@gmail.com> wrote: > > How large? And across how many EMRs? > > > JG > — > Sent from Mailbox > > On Mon, Sep 29, 2014 at 6:58 PM, Ajay Jain <ajayj...@mobileinsights.net> > wrote: > >> Sorry, I wasn't clear. I am working on a related project and trying to >> figure out if the code can be repurposed for a lab mention annotator for >> cTAKES. From what I have seen, test names from different institutions are >> not standardized which makes it hard to standardize the resulting >> annotation. Getting access to a larger lab tests dataset (structured) will >> help me fine tune the model. >> >> Hope this helps. >> Ajay >> Sent from my iPhone >>> On Sep 29, 2014, at 2:12 PM, "Savova, Guergana" >>> <guergana.sav...@childrens.harvard.edu> wrote: >>> >>> Ajay, >>> cTAKES currently does not implement a method to discover labs from the >>> text. The motivation is that you can get that easily from the structured >>> part of the EMR (what Pete explained below). Hope this makes sense! >>> --Guergana >>> >>> -----Original Message----- >>> From: Peter Szolovits [mailto:p...@mit.edu] >>> Sent: Monday, September 29, 2014 2:32 PM >>> To: dev@ctakes.apache.org >>> Subject: Re: De-identified lab tests dataset >>> >>> Ajay, I'm confused by your query. cTakes is good at interpreting text, but >>> most lab test results are reported in tabular form that is most >>> appropriately searched by SQL queries. Sometimes lab results are also >>> reported in narrative notes, but parsing those is often more a matter of >>> deciphering the text structure of tables than of parsing real English text. >>> What am I misunderstanding? >>> >>> --Pete Sz. >>> >>>> On Sep 29, 2014, at 2:25 PM, Ajay Jain <ajayj...@mobileinsights.net> wrote: >>>> >>>> Hello All, >>>> >>>> I am working on a use case for lab tests data using cTAKES and my >>>> online search to find a test dataset has been futile. I'll greatly >>>> appreciate if someone can share such a dataset or can point me in the >>>> right direction to go looking for one. >>>> >>>> Best, >>>> Ajay >>>> >>>> -- >>>> Founder & CEO >>>> Mobile Insights, Inc. >>>> (630) 408-8623
