There is currently no guides on the confluence wiki for cTAKES 3.2.0... I was thinking of just cloning 3.1.1 https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+3.1.1
And just add the YTEX and/or any new changes to it... Would be grateful for any help here... > -----Original Message----- > From: John Green [mailto:john.travis.gr...@gmail.com] > Sent: Tuesday, July 22, 2014 2:37 PM > To: dev@ctakes.apache.org > Subject: Re: [VOTE] Release Apache cTAKES 3.2.0 (rc2) > > What exactly needs updated? I have not had the time (unfortunately) to > help with this project very much because of the steep learning curve on the > technology. I'm currently on some protected research time working with > cTakes as of this week and would be happy to help with some grunt work. > > JG > > > On Tue, Jul 22, 2014 at 11:39 AM, Bleeker, Troy C. <bleeker.t...@mayo.edu> > wrote: > > > One page at a time. At least there's that. > > > > Thanks > > Troy > > -----Original Message----- > > From: Masanz, James J. > > Sent: Tuesday, July 22, 2014 10:38 AM > > To: 'dev@ctakes.apache.org' > > Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2) > > > > When I asked Troy that question for 3.1.1, he didn't know of a way, > > and I don't either, which is why I had the 3.1.1 page mostly just > > reference the > > 3.2 documentation. > > > > -----Original Message----- > > From: Chen, Pei [mailto:pei.c...@childrens.harvard.edu] > > Sent: Tuesday, July 22, 2014 10:00 AM > > To: dev@ctakes.apache.org > > Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2) > > > > Thanks James. > > I was planning on closing the vote today. > > In the meantime, does anyone a quick way to clone/rename the wiki > > documentation for 3.2? > > --Pei > > > > > -----Original Message----- > > > From: Masanz, James J. [mailto:masanz.ja...@mayo.edu] > > > Sent: Monday, July 21, 2014 4:25 PM > > > To: 'dev@ctakes.apache.org' > > > Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2) > > > > > > Here's the additional I've done > > > > > > I ran "mvn test" with 0 Failures and 0 Errors. > > > Ran the AggregateTemplateFiller.xml and received same output (except > > > for internal UIMA identifiers) with rc2 as I did with 3.1.1. > > > > > > +1 to release > > > > > > -----Original Message----- > > > From: Masanz, James J. > > > Sent: Wednesday, July 16, 2014 3:59 PM > > > To: 'dev@ctakes.apache.org' > > > Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2) > > > > > > FYI, so far I have done the following steps: > > > > > > downloaded the source archive > > > compiled it using: maven compile > > > downloaded the separately available resources set up classpath to > > > include e.g. jars (from the bin distribution) set ctakes.umlsuser > > > and ctakes.umlspw env vars run runctakesCVD.bat loaded > > > AggregatePlaintextUMLSProcessor.xml > > > ran against some simple text. > > > verified did not through an exception. > > > verified some EventMention and EntityMention annotations were > produced. > > > > > > I will do more testing tomorrow. Just giving a status update. > > > > > > --James > > > > > > -----Original Message----- > > > From: Miller, Timothy [mailto:timothy.mil...@childrens.harvard.edu] > > > Sent: Saturday, July 12, 2014 6:24 AM > > > To: dev@ctakes.apache.org > > > Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2) > > > > > > Agreed on that. > > > > > > I downloaded the new resources binary and was able to run my tests > > > on the - bin version of the RC. > > > > > > +1 for making this the release. > > > > > > Tim > > > > > > > > > ________________________________________ > > > From: Masanz, James J. [masanz.ja...@mayo.edu] > > > Sent: Friday, July 11, 2014 7:27 PM > > > To: 'dev@ctakes.apache.org' > > > Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2) > > > > > > I agree about keeping the thread open. > > > > > > -- James > > > > > > -----Original Message----- > > > From: Chen, Pei [mailto:pei.c...@childrens.harvard.edu] > > > Sent: Friday, July 11, 2014 4:28 PM > > > To: dev@ctakes.apache.org > > > Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2) > > > > > > Updated the lvg.properties file within ctakes-resources on > > > sourceforge > > [1]. > > > Since the Apache cTAKES artifacts didn't change, I would like to > > > keep this VOTE thread open. > > > > > > Also renamed it to 3.2.0 (even though they technically do not have > > > to follow each other, but probably nice to keep it consistent for > > > users as James > > > suggested.) [1] > > > http://sourceforge.net/projects/ctakesresources/files/ctakes-resourc > > > es > > > - > > > 3.2.0.zip/download > > > > > > > -----Original Message----- > > > > From: Masanz, James J. [mailto:masanz.ja...@mayo.edu] > > > > Sent: Thursday, July 10, 2014 5:53 PM > > > > To: 'dev@ctakes.apache.org' > > > > Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2) > > > > > > > > Can you also give ctakesresources the number 3.2 or 3.2.0 instead > > > > of > > > > 3.1.3 > > > > > > > > -----Original Message----- > > > > From: Chen, Pei [mailto:pei.c...@childrens.harvard.edu] > > > > Sent: Thursday, July 10, 2014 2:12 PM > > > > To: dev@ctakes.apache.org > > > > Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2) > > > > > > > > I think this is due to the fact that the default lvg.properties > > > > also exits in the ctakes-resources project, so if you download and > > > > replace, it will override the ctakes configured one. > > > > I think it's a bug, but probably always been there... > > > > I'll fix up ctakes-resources on sourceforge nethertheless but it > > > > shouldn't require any changes to the release candidates. > > > > > > > > > -----Original Message----- > > > > > From: Masanz, James J. [mailto:masanz.ja...@mayo.edu] > > > > > Sent: Thursday, July 10, 2014 11:59 AM > > > > > To: 'dev@ctakes.apache.org' > > > > > Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2) > > > > > > > > > > Hi Tim, > > > > > > > > > > When you say that it didn't seem to affect the run, where you > > > > > comparing output to last release or just checking if data seemed > > > > > OK at a > > > > glance? > > > > > > > > > > -----Original Message----- > > > > > From: Miller, Timothy > > > > > [mailto:timothy.mil...@childrens.harvard.edu] > > > > > Sent: Thursday, July 10, 2014 7:29 AM > > > > > To: dev@ctakes.apache.org > > > > > Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2) > > > > > > > > > > I was able to run the binary without issues this time. > > > > > I also downloaded the resources from sourceforge and integrated > > > > > into the bin release and ran with the ctakes dictionary. > > > > > > > > > > I did get some weird exceptions thrown that didn't seem to > > > > > affect the run -- looks like some hardcoded file paths in LVG? > > > > > (See > > > > > below) > > > > > > > > > > Tim > > > > > > > > > > > > > > > Exception: java.io.FileNotFoundException: > > > > > > /export/home/lu/Development/LVG/lvg2008/data/misc/stopWords.data > > > > > (No such file or directory) > > > > > ** Error: problem of opening/reading stop words file: > > > > > > > > > '/export/home/lu/Development/LVG/lvg2008/data/misc/stopWords.data'. > > > > > Exception: java.io.FileNotFoundException: > > > > > > > > > > > > > /export/home/lu/Development/LVG/lvg2008/data/misc/nonInfoWords.data > > > > > (No such file or directory) > > > > > ** Error: problem of opening/reading non-Info words file: > > > > > > > > > > > > > '/export/home/lu/Development/LVG/lvg2008/data/misc/nonInfoWords.dat > > > > > a'. > > > > > Exception: java.io.FileNotFoundException: > > > > > > > > > > > > > /export/home/lu/Development/LVG/lvg2008/data/misc/conjunctionWord.d > > > > > ata (No such file or directory) > > > > > ** Error: problem of opening/reading conjunction words file: > > > > > > > > > > > > > '/export/home/lu/Development/LVG/lvg2008/data/misc/conjunctionWord. > > > > > data'. > > > > > ** ERR: problem of opening/reading diacritics file: > > > > > > > > > > > > > '/export/home/lu/Development/LVG/lvg2008/data/Unicode/diacriticMap.d > > > a > > > > > ta'. > > > > > Exception: java.io.FileNotFoundException: > > > > > > > > > > > > > /export/home/lu/Development/LVG/lvg2008/data/Unicode/diacriticMap.da > > > > > ta (No such file or directory) > > > > > Exception: java.io.FileNotFoundException: > > > > > > > > > > > > > /export/home/lu/Development/LVG/lvg2008/data/Unicode/ligatureMap.da > > > > > ta (No such file or directory) > > > > > ** Error: problem of opening/reading ligature file: > > > > > > > > > > > > > '/export/home/lu/Development/LVG/lvg2008/data/Unicode/ligatureMap.da > > > > > ta'. > > > > > ** Error: problem of opening/reading symbol synonym file: > > > > > > > > > > > > > '/export/home/lu/Development/LVG/lvg2008/data/Unicode/synonymMap. > > > > > data'. > > > > > Exception: java.io.FileNotFoundException: > > > > > > > > > > > > > /export/home/lu/Development/LVG/lvg2008/data/Unicode/synonymMap.d > > > > > ata (No such file or directory) > > > > > **Error: problem of opening/reading file > > > > > > '/export/home/lu/Development/LVG/lvg2008/data/misc/removeS.data'. > > > > > Exception: java.io.FileNotFoundException: > > > > > > /export/home/lu/Development/LVG/lvg2008/data/misc/removeS.data > > > > (No > > > > > such file or directory) > > > > > ** Error: problem of opening/reading Unicode symbol file: > > > > > > > > > > > > > '/export/home/lu/Development/LVG/lvg2008/data/Unicode/symbolMap.da > > > > > ta'. > > > > > Exception: java.io.FileNotFoundException: > > > > > > > > > > > > > /export/home/lu/Development/LVG/lvg2008/data/Unicode/symbolMap.dat > > > > > a (No such file or directory) > > > > > ** Error: problem of opening/reading Unicode file: > > > > > > > > > > > > > '/export/home/lu/Development/LVG/lvg2008/data/Unicode/unicodeMap.d > > > > > ata'. > > > > > Exception: java.io.FileNotFoundException: > > > > > > > > > > > > > /export/home/lu/Development/LVG/lvg2008/data/Unicode/unicodeMap.da > > > > > ta (No such file or directory) > > > > > ** Error: problem of opening/reading nonStripMap file: > > > > > > > > > > > > > '/export/home/lu/Development/LVG/lvg2008/data/Unicode/nonStripMap.d > > > > > ata'. > > > > > Exception: java.io.FileNotFoundException: > > > > > > > > > > > > > /export/home/lu/Development/LVG/lvg2008/data/Unicode/nonStripMap.d > > > > > ata (No such file or directory) > > > > > java.sql.SQLException: File input/output error > > > > > > > > > > > > > /export/home/lu/Development/LVG/lvg2008/data/HSqlDb/lvg2008.properti > > > > > es java.io.FileNotFoundException: > > > > > > > > > > > > > /export/home/lu/Development/LVG/lvg2008/data/HSqlDb/lvg2008.properti > > > > > es.new (No such file or directory) > > > > > > > > > > ________________________________________ > > > > > From: Masanz, James J. [masanz.ja...@mayo.edu] > > > > > Sent: Wednesday, July 09, 2014 2:26 PM > > > > > To: 'dev@ctakes.apache.org' > > > > > Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2) > > > > > > > > > > So far for rc2, I've > > > > > > > > > > Verified MD5 and signatures of .zip archives Verified that > > > > > source at tag matches source in.zip Imported source from archive > > > > > into eclipse as maven > > > > > project(s) and compiled without any Errors. > > > > > > > > > > -- James > > > > > > > > > > > > > > > -----Original Message----- > > > > > From: Pei Chen [mailto:chen...@apache.org] > > > > > Sent: Tuesday, July 08, 2014 5:11 PM > > > > > To: dev@ctakes.apache.org > > > > > Subject: [VOTE] Release Apache cTAKES 3.2.0 (rc2) > > > > > > > > > > Hi all, > > > > > > > > > > The main difference between rc1 and rc2 is that we removed the > > > > > lvg-res and assertion-res.jar from the distro. They still need > > > > > to be > > > unpacked. > > > > > > > > > > This is a call for a vote on releasing the following candidate > > > > > (rc2) as Apache cTAKES 3.2.0. > > > > > The major changes include: > > > > > - New optional YTEX component(s) (Yale Extensions to cTAKES) > > > > > - New optional improved/faster dictionary lookup > > > > > (dictionary-lookup-fast) > > > > > - New optional Temporal component (Time + Event extraction. > > > > > Relations will be including in a future release.) > > > > > - Other bug fixes/enhancements from Jira > > > > > > > > > > [TODO: Online documentation still needs to be updated on wiki] > > > > > > > > > > For more detailed information on the changes/release notes, > > > > > please > > visit: > > > > > https://issues.apache.org/jira/secure/ReleaseNote.jspa?projectId > > > > > =1 > > > > > 23 > > > > > 13 > > > > > 621 > > > > > &version=12324066 > > > > > > > > > > The release was made using the cTAKES release process documented > > > here: > > > > > http://ctakes.apache.org/ctakes-release-guide.html > > > > > > > > > > The candidate is available at: > > > > > http://people.apache.org/~chenpei/RCs/ctakes-3.2.0-rc2/apache-ct > > > > > ak > > > > > es > > > > > - > > > > > 3.2.0-src.tar.gz > > > > > /.zip > > > > > > > > > > The tag to be voted on: > > > > > http://svn.apache.org/repos/asf/ctakes/tags/ctakes-3.2.0-rc2 > > > > > > > > > > The MD5 checksum of the tarball can be found at: > > > > > http://people.apache.org/~chenpei/RCs/ctakes-3.2.0-rc2/apache-ct > > > > > ak > > > > > es > > > > > - > > > > > 3.2.0-src.tar.gz.md5 > > > > > /.zip.md5 > > > > > > > > > > The signature of the tarball can be found at: > > > > > http://people.apache.org/~chenpei/RCs/ctakes-3.2.0-rc2/apache-ct > > > > > ak > > > > > es > > > > > - > > > > > 3.2.0-src.tar.gz.asc > > > > > /.zip.asc > > > > > > > > > > Apache cTAKES' KEYS file, containing the PGP keys used to sign > > > > > the > > > release: > > > > > https://dist.apache.org/repos/dist/release/ctakes/KEYS > > > > > > > > > > Please vote on releasing these packages as Apache cTAKES 3.2.0. > > > > > The vote is open for at least the next 72 hours. > > > > > Only votes from the cTAKES PMC are binding, but folks are > > > > > welcome to check the release candidate and voice their approval > > > > > or > > disapproval. > > > > > The vote passes if at least three binding +1 votes are cast. > > > > > > > > > > [ ] +1 Release the packages as Apache cTAKES 3.2.0 [ ] -1 Do not > > > > > release the packages because... > > > > > > > > > > Also, the convenience binary can be found at: > > > > > http://people.apache.org/~chenpei/RCs/ctakes-3.2.0-rc2/apache-ct > > > > > ak > > > > > es > > > > > - > > > > > 3.2.0-bin.tar.gz > > > > > /.zip > > > > > > > > > > Note: It's temporarily on people.a.o because the artifacts were > > > > > too large for https://dist.apache.org/repos/dist/dev/ctakes > > > > > (Working with infra on increasing the limit). > > > > > > > > > > > > > > > Thanks! > >
