Hi John, YTEX ships with 3 concept graphs (see https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+3.1.2+-+Semantic+Similarity ):
- sct-rxnorm: concepts from SNOMED-CT and RXNORM. This is the default. - sct-msh-csp-aod: concepts from the SNOMED-CT, MeSH, CRISP, and Alcohol and Drug thesaurus - umls: concepts from all restriction free (level 0) UMLS source vocabularies and SNOMED-CT These concept graphs are included in ytex resources zip (see https://cwiki.apache.org/confluence/display/CTAKES/YTEX+Installation): 3) Unzip YTEX Resources (Optional - UTS login required) Download and unzip ctakes-ytex-resources-3.1.2-SNAPSHOT.zip <http://www.ytex-nlp.org/umls.download/secure/3.1/ctakes-ytex-resources-3.1.2-SNAPSHOT.zip> 'over' your installation. This contains: - Concept Graphs derived from the UMLS2013AA used to compute semantic similarity measures All YTEX packages moved from the ytex namespace into org.apache.ctakes.ytex - can you tell me which document you were looking at that mentioned ytex.kernel.dao.ConceptDaoImpl? I thought I had fixed this in the documentation. HTH, -vj On Sun, Jun 29, 2014 at 2:25 PM, John Green <john.travis.gr...@gmail.com> wrote: > I got the semantic similarity web app running in ytex. Im still learning > umls terminology, but I believe it says that out of the box its concept > graphs are limited to the free set from umls? Does this mean without > permissions? Similar to ctakes with umls rights? The concepts available > seem limited so this would make sense. > > So, to take full advantage I would need to rebuild the concept graph, > correct? Im in the process of doing this but getting classpath errors. I > used java a bit ten years ago, so you can probably guess these will take me > a minute to resolve. Notably, it is complaining about > ytex.kernel.dao.ConceptDaoImpl. > > > Thanks all, > > > JG > > — > Sent from Mailbox for iPhone
