Hmm, couldn't you just fetch the matched atom and use that? Should be the same information (without, I suppose, the original ordering and split).
-- Karthik Sarma UCLA Medical Scientist Training Program Class of 20?? Member, UCLA Medical Imaging & Informatics Lab Member, CA Delegation to the House of Delegates of the American Medical Association ksa...@ksarma.com gchat: ksa...@gmail.com linkedin: www.linkedin.com/in/ksarma On Tue, Oct 1, 2013 at 12:37 PM, Masanz, James J. <masanz.ja...@mayo.edu>wrote: > Yes, this would help address that multiple permutations example. The new > getOriginalText method would return something like "Acute|Disease". Right > now I'm thinking of just using vertical bar as delimiter, to start with at > least, but think it should be configurable. > > -----Original Message----- > From: dev-return-2067-Masanz.James=mayo....@ctakes.apache.org [mailto: > dev-return-2067-Masanz.James=mayo....@ctakes.apache.org] On Behalf Of > Chen, Pei > Sent: Tuesday, October 01, 2013 9:38 AM > To: dev@ctakes.apache.org > Subject: CTAKES-248- include original covered text of NEs which can't be > recovered post if NE is from a disjoint span > > This sounds pretty cool. > James, will this address the multiple permutations lookup example: > "Acute alcoholic liver disease." There is a cui: C0001314: Acute Disease, > but if you getCoveredText(), on the UMLSConcept, you would actually get the > same "Acute alcoholic liver disease" instead of "Acute Disease". > So, there is a new field called getOriginalText() that matched the hit? > > > -----Original Message----- > > From: james-mas...@apache.org [mailto:james-mas...@apache.org] > > Sent: Monday, September 30, 2013 5:49 PM > > To: comm...@ctakes.apache.org > > Subject: svn commit: r1527792 - /ctakes/trunk/ctakes-type- > > system/src/main/resources/org/apache/ctakes/typesystem/types/TypeSyst > > em.xml > > > > Author: james-masanz > > Date: Mon Sep 30 21:48:01 2013 > > New Revision: 1527792 > > > > URL: http://svn.apache.org/r1527792 > > Log: > > CTAKES-248 - for named entities, since the annotation just has the > begin and > > end offset, it is requested to have a way to get the original covered > text > > (especially for disjoint spans) so it is possible to know which words in > the > > covered text were actually used in the matching to the dictionary entry > > > > Modified: > > ctakes/trunk/ctakes-type- > > system/src/main/resources/org/apache/ctakes/typesystem/types/TypeSyst > > em.xml > > > > Modified: ctakes/trunk/ctakes-type- > > system/src/main/resources/org/apache/ctakes/typesystem/types/TypeSyst > > em.xml > > URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-type- > > system/src/main/resources/org/apache/ctakes/typesystem/types/TypeSyst > > em.xml?rev=1527792&r1=1527791&r2=1527792&view=diff > > ========================================================== > > ==================== > > Binary files - no diff available. > > > >
