Steve, warnings from mvn compile are attached. Afterwards, mvn compile
finished successfully with no other warnings or errors.
Pei, I've definitely compiled this particular environment successfully
after the clear-tk lib upgrades. Poms, etc, are showing that they are
updated correctly. I've tried maven updates, svn updates, clean & rebuild,
refreshes, etcs multiple times in eclipse.
I don¹t think it's a general problem because I have other environments
doing just fine, and Jenkins is not showing problems.
Thanks!
stephen
On 7/30/13 6:38 PM, "Steven Bethard" <[email protected]> wrote:
>On 30 Jul2013, at 7:32 , "Wu, Stephen T., Ph.D." <[email protected]>
>wrote:
>> Is anyone else getting errors importing from cleartk? In one of my
>> environments, the following projects:
>> ctakes-assertion
>> ctakes-relation-extractor
>> ctakes-temporal
>> are complaining about not finding these classes
>> - org.cleartk.classifier.liblinear.LIBLINEARStringOutcomeDataWriter
>> - org.cleartk.classifier.tksvmlight.model
>>
>> Did I somehow lose the cleartk-ml stuff? Afaik all of this was running
>> before... I have not modified any maven dependenciesŠ
>
>Could you paste the output of `mvn compile`?
>
>Steve
r0199870 (~/work/sharpattr/ctakes) $ mvn compile
[INFO] Scanning for projects...
[WARNING]
[WARNING] Some problems were encountered while building the effective model for
org.apache.ctakes:ctakes-assertion:jar:3.1.0-SNAPSHOT
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must
be unique: junit:junit:jar -> duplicate declaration of version (?) @ line 154,
column 15
[WARNING] 'dependencies.dependency.systemPath' for
org.mitre.medfacts:medfacts-i2b2:jar should not point at files within the
project directory, ${project.basedir}/lib/med-facts-i2b2-1.2-SNAPSHOT.jar will
be unresolvable by dependent projects @ line 192, column 16
[WARNING] 'dependencies.dependency.systemPath' for
org.mitre.medfacts:medfacts-zoner:jar should not point at files within the
project directory, ${project.basedir}/lib/med-facts-zoner-1.1.jar will be
unresolvable by dependent projects @ line 199, column 16
[WARNING] 'dependencies.dependency.systemPath' for
org.mitre.jcarafe.core:jcarafe.core:jar should not point at files within the
project directory, ${project.basedir}/lib/jcarafe-core_2.9.1-0.9.8.3.RC4.jar
will be unresolvable by dependent projects @ line 206, column 16
[WARNING] 'dependencies.dependency.systemPath' for
org.mitre.jcarafe.ext:jcarafe.ext:jar should not point at files within the
project directory, ${project.basedir}/lib/jcarafe-ext_2.9.1-0.9.8.3.RC4.jar
will be unresolvable by dependent projects @ line 213, column 16
[WARNING]
[WARNING] Some problems were encountered while building the effective model for
org.apache.ctakes:ctakes-temporal:jar:3.1.0-SNAPSHOT
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must
be unique: org.jdom:jdom2:jar -> duplicate declaration of version (?) @ line
91, column 17
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must
be unique: com.lexicalscope.jewelcli:jewelcli:jar -> duplicate declaration of
version (?) @ line 95, column 21
[WARNING]
[WARNING] Some problems were encountered while building the effective model for
org.apache.ctakes:ctakes-distribution:pom:3.1.0-SNAPSHOT
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must
be unique: org.apache.ctakes:ctakes-ne-contexts:jar -> duplicate declaration of
version (?) @ line 99, column 15
[WARNING]
[WARNING] It is highly recommended to fix these problems because they threaten
the stability of your build.
[WARNING]
[WARNING] For this reason, future Maven versions might no longer support
building such malformed projects.
[WARNING]
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO]
[INFO] Apache cTAKES
[INFO] Apache cTAKES common type system
[INFO] Apache cTAKES utils
[INFO] Apache cTAKES Resources core
[INFO] Apache cTAKES core
[INFO] Apache cTAKES Resources pos-tagger
[INFO] Apache cTAKES part-of-speech tagger
[INFO] Apache cTAKES Resources ctakes-chunker-res
[INFO] Apache cTAKES chunker
[INFO] Apache cTAKES document preprocessor
[INFO] Apache cTAKES Resources dictionary-lookup
[INFO] Apache cTAKES dictionary lookup
[INFO] Apache cTAKES context dependent tokenizer
[INFO] Apache cTAKES Resources lvg
[INFO] Apache cTAKES LVG lexical tools
[INFO] Apache cTAKES Resources ne-contexts
[INFO] Apache cTAKES named entity contexts
[INFO] Apache cTAKES Resources constituency-parser
[INFO] Apache cTAKES Constituency Parser
[INFO] Apache cTAKES Resources coreference
[INFO] Apache cTAKES Resources relation-extractor
[INFO] Apache cTAKES Resources dependency-parser
[INFO] Apache cTAKES Dependency Parser
[INFO] Apache cTAKES Relation Extractor
[INFO] Apache cTAKES CoReference Resolver
[INFO] Apache cTAKES Resources drug-ner
[INFO] Apache cTAKES Drug NER
[INFO] Apache cTAKES Resources side-effect
[INFO] Apache cTAKES Side Effects
[INFO] Apache cTAKES Resources smoking-status
[INFO] Apache cTAKES Smoking Status
[INFO] Apache cTAKES Resources pad-term-spotter-res
[INFO] Apache cTAKES Pad Term Spotter
[INFO] Apache cTAKES Resources assertion
[INFO] Apache cTAKES Resources assertion-zoner
[INFO] Apache cTAKES Assertion's zoner
[INFO] Apache cTAKES Assertion
[INFO] Apache cTAKES Resources temporal
[INFO] Apache cTAKES Temporal Information Extraction
[INFO] Apache cTAKES ctakes-clinical-pipeline
[INFO] Apache cTAKES Distribution
[INFO] Apache cTAKES Regression-test
[INFO] Apache cTAKES template filler
[INFO]
[INFO]
