OK, after fidgeting with NetBeans for too long without results, I went with Phil's suggestion and just used subversion at the command prompt. It was much easier than trying to configure NetBeans.

I uploaded the patch this evening. It includes two new classes StorelessCovariance.java and StorelessCovarianceMatrix.java. I also included a new test class StorelessCovarianceTest.java.

Interestingly, the one-pass algorithm is slightly less accurate than the two-pass algorithm. I had to reduce the tolerance from 10E-9 to 10E-7 in order for tests to pass with the Longley data. The tolerance was not changed for the Swiss data. It remained 10E-13 for the Swiss data.

The one-pass algorithm is described in a paper by Pebay (2008) http://prod.sandia.gov/techlib/access-control.cgi/2008/086212.pdf

Thanks for everyone's help.

Patrick



On 8/17/2011 12:13 PM, Patrick wrote:
I am workin on the StorelessCovariance per jira MATH-449. However, I'm having a hard time using subversion via Netbeans. I have successfully created the new classes and a JUnit test. However, when I run the test I get the following message,

"caused an ERORR: Absent Code attribute in method that is not native or abstract in class file org/apache/commons/math/TestUtils"

Any help would be appreciated. I have a lot to contribute to commons math but my lack of experience with subversion is really hindering me.

Thanks,
Patrick



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