Didn't help much, I actually rebuilt whole arrow cpp with export 
CMAKE_CXX_FLAGS="-DFLATBUFFERS_LITTLEENDIAN=0" and then tried to build simple 
debug, still it's failing in same step.
Thanks,Sanjay

> From: wesmck...@gmail.com
> Date: Mon, 1 Aug 2016 13:07:11 -0700
> Subject: Re: Core dump while building with CPP
> To: dev@arrow.apache.org
> 
> See from flatbuffers.h
> 
> // The wire format uses a little endian encoding (since that's efficient for
> // the common platforms).
> #if !defined(FLATBUFFERS_LITTLEENDIAN)
>   #if defined(__GNUC__) || defined(__clang__)
>     #ifdef __BIG_ENDIAN__
>       #define FLATBUFFERS_LITTLEENDIAN 0
>     #else
>       #define FLATBUFFERS_LITTLEENDIAN 1
>     #endif // __BIG_ENDIAN__
>   #elif defined(_MSC_VER)
>     #if defined(_M_PPC)
>       #define FLATBUFFERS_LITTLEENDIAN 0
>     #else
>       #define FLATBUFFERS_LITTLEENDIAN 1
>     #endif
>   #else
>     #error Unable to determine endianness, define FLATBUFFERS_LITTLEENDIAN.
>   #endif
> #endif // !defined(FLATBUFFERS_LITTLEENDIAN)
> 
> I believe you may want to add -DFLATBUFFERS_LITTLEENDIAN=0 to
> CMAKE_CXX_FLAGS (you can do this on the command line).
> 
> Since not many of us have access to big endian hardware, it would be
> helpful of you could submit a patch indicating what you had to do to
> get things working on your platform.
> 
> Thanks
> 
> On Mon, Aug 1, 2016 at 12:57 PM, Sanjay Rao <getsanjay...@live.com> wrote:
> >
> > cmake -DARROW_BUILD_BENCHMARKS=ON .....make[  0%] Running flatc compiler on 
> > /u01/hadoop/src/arrow/arrow/cpp/../format/Message.fbsAssertion failed: 
> > *reinterpret_cast<char *>(&endiantest) == FLATBUFFERS_LITTLEENDIAN, file 
> > /u01/hadoop/src/arrow/arrow/cpp/thirdparty/flatbuffers-1.3.0/include/flatbuffers/flatbuffers.h,
> >  line 128, function EndianCheck*** Signal 6 - core dumped
> > Does it mean I cannot run it on BIG ENDIAN system ? or can I comment this 
> > line and proceed building it ?
> > Thanks,Sanjay
                                          

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