Do you still have the debs for Skype and Thunderbird installed? If so
then two icons is expected (bug 1971610).

You can check with:

  dpkg -l

** Changed in: gnome-shell (Ubuntu)
       Status: New => Incomplete

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https://bugs.launchpad.net/bugs/2078728

Title:
  two desktop icons are shown for snap apps after upgrading from 22.04.4
  to 24.04.1

Status in gnome-shell package in Ubuntu:
  Incomplete

Bug description:
  After upgrading from 22.04.4 to 24.04.1 two desktop for snap apps are
  shows in all applications menu

To manage notifications about this bug go to:
https://bugs.launchpad.net/ubuntu/+source/gnome-shell/+bug/2078728/+subscriptions


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