I downloaded a similar file from
ftp://ftp.pdbj.org/pub/pdb/data/structures/all/pdb/pdb163l.ent.gz
...
and with the current version of file-roller and jmol, I could not reproduce
this bug.
So I consider it as non-reproducible, and will close it.
** Changed in: file-roller (Ubuntu)
Status: New => Fix Released
** Changed in: jmol (Ubuntu)
Status: New => Fix Released
** Changed in: rasmol (Ubuntu)
Status: New => Fix Released
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https://bugs.launchpad.net/bugs/1159492
Title:
science PDB file is not processed correctly after extraction
Status in file-roller package in Ubuntu:
Fix Released
Status in jmol package in Ubuntu:
Fix Released
Status in rasmol package in Ubuntu:
Fix Released
Bug description:
The affected archiv will be attached.
When I open the archiv
pdb163d.ent.gz
with file roller, I get the compressed file shown in file-roller GUI,
When I open it within the file-roller GUI with rasmol or jmol all
works correct and the protein structure is shown.
So, far so good.
When I extract the compressed file to the filesystem, close file-roller,
because it is no longer needed.
When I ttry then to open the file
pdb163d.ent
with rasmol or jmol it is not possible. The file is not anymore a
appopriate format for those programs.
Steps to reproduce:
1.Install rasmol and jmol (oneof them may be enough)
2.Donwlaod the file
pdb163d.ent.gz
from here,
3.Extract the file to the filesytem with file-roller
4.Try to open the file with right mouse click - > open with... -> choose
rasmol or jmol as your choice
5.See only a black visualisation or in jmol an error message(file not found
exception)
ProblemType: Bug
DistroRelease: Ubuntu 12.10
Package: file-roller 3.6.1.1-0ubuntu1.1
ProcVersionSignature: Ubuntu 3.5.0-27.45-generic 3.5.7.7
Uname: Linux 3.5.0-27-generic x86_64
NonfreeKernelModules: fglrx
ApportVersion: 2.6.1-0ubuntu10
Architecture: amd64
Date: Sun Mar 24 19:33:18 2013
ExecutablePath: /usr/bin/file-roller
InstallationDate: Installed on 2013-01-13 (70 days ago)
InstallationMedia: Ubuntu 12.10 "Quantal Quetzal" - Release amd64 (20121017.5)
MarkForUpload: True
ProcEnviron:
PATH=(custom, no username)
XDG_RUNTIME_DIR=<set>
LANG=de_DE.UTF-8
SHELL=/bin/bash
SourcePackage: file-roller
UpgradeStatus: No upgrade log present (probably fresh install)
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