No, the applications once moved can be used normally.

Strangely, I'm now seeing the apps on workspaces 3 and 4 move to the
secondary display even though the primary display was the last used and
after continued changing of the dock position (including moving it to
the right) the application on workspace 2 moved to workspace 1 which it
hadn't done so before. So all applications were either on workspace 1
(primary) or the secondary display.

There are clearly other problems which may or may not be related. After
continued changing of the dock position: the icon size reduced to 16
(was 32) and once an application has moved the titlebar doesn't always
respond to the first mouse click.

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Ubuntu.
https://bugs.launchpad.net/bugs/1965505

Title:
  Changing the position of the dock moves applications to first
  workspace

Status in gnome-shell package in Ubuntu:
  New
Status in gnome-shell-extension-ubuntu-dock package in Ubuntu:
  New

Bug description:
  I have a two monitor set-up with four workspaces on the primary
  display and an additional workspace on the secondary display. I
  normally have an application running in each workspace.

  If I open Settings | Dock | Position on screen and change the setting
  from 'Left' to 'Bottom' I find that the applications on workspaces 3
  and 4 move to workspace 1. The applications in workspaces 1 and 2
  remain running in those workspaces. Reverting to the change doesn't
  move the applications back to their former workspace.

  There have been other occasions when I have seen this behaviour but am
  I unable to reproduce at this time.

  ProblemType: Bug
  DistroRelease: Ubuntu 22.04
  Package: mutter-common 42~beta-1ubuntu2
  ProcVersionSignature: Ubuntu 5.15.0-22.22-generic 5.15.19
  Uname: Linux 5.15.0-22-generic x86_64
  ApportVersion: 2.20.11-0ubuntu79
  Architecture: amd64
  CasperMD5CheckResult: pass
  CurrentDesktop: ubuntu:GNOME
  Date: Fri Mar 18 08:03:00 2022
  InstallationDate: Installed on 2021-11-11 (126 days ago)
  InstallationMedia: Ubuntu 21.10 "Impish Indri" - Release amd64 (20211012)
  PackageArchitecture: all
  SourcePackage: mutter
  UpgradeStatus: Upgraded to jammy on 2021-11-11 (126 days ago)

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