Hello anybody. Yes a has same issue too - it happens because an of running 
application was hung up. System detect it and show pop - up message in the 
middle of screen about waiting or force closing hung application. More often it 
happens during debugging an application, when break point was raised and 
debugger waiting user action so system count this application as hang. Some 
times it happens so system detect hung application but some reason can't show 
popup message over hang application. It looks so like wrote on first post - 
blocking mouse input at any windows except application bar and gnome dashboard. 
In some application keyboard become locked too, for exaple in Eclipse.  Usually 
i switch to each application and try to interact with it by keyboard typing. If 
i suspect application hang, i run or switch to gnome-terminal and use command 
top to detect process id of hang application. Then i found it i use
 sudo kill <app ID>
As is hang application was closed - normal mouse input will restored.

But main question conclude to how to change reaction of system on hanged
application - turn off annoing modal dialog. This dialog so bore me a
lot. Each time when break point occur during debug process, Unubtu pop
up this modal dialog and lock all mouse input in other apps, include
debugger too. I need to switch debugging app and press "Wait" in this
popup message, some times it need to do more than once. Then I return to
debugger continue work.

Some one know how to turn off ubuntu hang application detection?

** Attachment added: "1561471346360.jpg"
   
https://bugs.launchpad.net/ubuntu/+source/gnome-shell/+bug/1181666/+attachment/5274133/+files/1561471346360.jpg

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https://bugs.launchpad.net/bugs/1181666

Title:
  gnome-shell randomly blocks mouse clicks from working in app windows

Status in GNOME Shell:
  Confirmed
Status in Ubuntu GNOME:
  Confirmed
Status in gnome-shell package in Ubuntu:
  Confirmed
Status in mutter package in Ubuntu:
  Confirmed

Bug description:
  Under GNOME 3, the use of the mouse-click stops occasionally, though I
  can still move the mouse around and can still click on items in the
  Activities screen and the top-bar.

  I can use alt-tab to cycle windows and can still type into already-
  active textboxes in windows, but I cannot click within the windows,
  and the mouse is not picked up at all by the windows.

  I can open the alt-f2 "run command" dialogue, but cannot type into it.

  The workaround I'm using is to open terminal (ctrl-alt-T) and run
  "gnome-shell -r", and restarting that command every time I have the
  problem again.

  Please ask if there's anything I forgot to mention.

  ADDITIONAL: The error tends to happen randomly, but it seems to happen
  upon opening a new window, changing windows, closing windows, or
  opening the activities pane (whether a change of window is thus
  instigated or not)

  ADDITIONAL 2: (sorry, it's early) The other workaround is to log out
  and to log in again, but that is also less than ideal

  ProblemType: Bug
  DistroRelease: Ubuntu 13.04
  Package: gnome-shell 3.6.3.1-0ubuntu6
  ProcVersionSignature: Ubuntu 3.8.0-22.33-generic 3.8.11
  Uname: Linux 3.8.0-22-generic x86_64
  ApportVersion: 2.9.2-0ubuntu8
  Architecture: amd64
  Date: Sun May 19 07:02:18 2013
  DisplayManager: gdm
  GsettingsChanges:
   b'org.gnome.desktop.interface' b'clock-show-date' b'true'
   b'org.gnome.desktop.interface' b'clock-show-seconds' b'true'
   b'org.gnome.desktop.interface' b'document-font-name' b"'Sans 10'"
   b'org.gnome.desktop.interface' b'font-name' b"'Cantarell 10'"
   b'org.gnome.desktop.interface' b'monospace-font-name' b"'Ubuntu Mono 12'"
  InstallationDate: Installed on 2013-05-04 (14 days ago)
  InstallationMedia: Ubuntu-GNOME 13.04 "Raring Ringtail" - Release amd64 
(20130424)
  MarkForUpload: True
  ProcEnviron:
   LANGUAGE=en_GB:en
   PATH=(custom, no user)
   XDG_RUNTIME_DIR=<set>
   LANG=en_GB.UTF-8
   SHELL=/bin/bash
  SourcePackage: gnome-shell
  UpgradeStatus: No upgrade log present (probably fresh install)

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