My setup: 16.04 xenial, Kernel : Linux 4.4.0-67-generic
 
I agree it may be two different issues. 
Since two weeks I have having a related problem, although it is no the 
stuttering/freezing of the system mentioned in #45 (issue 1) while copying 
files. No crashing when copying files, just slowness and it never used to be a 
problem. It started when I was copying a few large files together and continued 
to affect this external hd since then. 

At some point copying relatively small files (say 700 mg files) to and from my 
WD elements 1TB external drive (even one file at the time) became incredibly 
slow. It is not that at some point the bar goes slower as in some versions 
where at 99% is seems to slow to a trickle. 
It is just slow from the start and continues to be slow till the end. It is 
somehow related to this particular external drive since I tried other drives 
and they work just fine. I checked it on a Windows and again it works fine so 
there is no physical problem with the drive itself. I tried to delete the 
files, thinking that's what it is all about, but I am still left with the same 
issue. It is a mess.

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https://bugs.launchpad.net/bugs/1208993

Title:
  Ubuntu slows down and hangs while copying file from/to USB

Status in nautilus package in Ubuntu:
  Confirmed

Bug description:
  Hi

  While copying many and large files to and from a USB drive, the system
  becomes incredibly slow and sometimes hangs. I watched the system
  monitor while it was running slowly but cpu was not above 50% at any
  time, the same for memory.

  I'm using the "WD my passport" HD with a USB3 port of my "ASUS K55VD"
  laptop.

  Description:  Ubuntu 13.04
  Release:      13.04

  nautilus:
    Installed: 1:3.6.3-0ubuntu16
    Candidate: 1:3.6.3-0ubuntu16
    Version table:
   *** 1:3.6.3-0ubuntu16 0
          500 http://ubuntu-archive.mirror.nucleus.be/ raring/main amd64 
Packages
          100 /var/lib/dpkg/status

  
  Steps to reproduce:
  1) Aquire many large files (like your totally legit moviecollection)
  2) Copy files to external HD
  3) Open your browser and be sad when your system becomes incredibly slow 
after a few minutes


  This is my first bugreport so if I'm missing something, please tell
  me.

  ProblemType: Bug
  DistroRelease: Ubuntu 13.04
  Package: nautilus 1:3.6.3-0ubuntu16
  ProcVersionSignature: Ubuntu 3.8.0-27.40-generic 3.8.13.4
  Uname: Linux 3.8.0-27-generic x86_64
  ApportVersion: 2.9.2-0ubuntu8.1
  Architecture: amd64
  Date: Tue Aug  6 22:56:34 2013
  EcryptfsInUse: Yes
  ExecutablePath: /usr/bin/nautilus
  GsettingsChanges:
   b'org.gnome.nautilus.window-state' b'geometry' b"'656x715+154+151'"
   b'org.gnome.nautilus.window-state' b'maximized' b'true'
  InstallationDate: Installed on 2013-05-31 (67 days ago)
  InstallationMedia: Ubuntu 13.04 "Raring Ringtail" - Release amd64 (20130424)
  MarkForUpload: True
  SourcePackage: nautilus
  UpgradeStatus: No upgrade log present (probably fresh install)

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