I had a similar problem when the public key spaned multiple lines
(however, using it with ssh worked).

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https://bugs.launchpad.net/bugs/372608

Title:
  import failure: Invalid file format

Status in “seahorse” package in Ubuntu:
  Confirmed

Bug description:
  Importing a SSH private key using File -> Import fails.
  The key is valid. Adding it to the ssh key agent on command line works as 
expected.
  This used to work in older Ubuntu versions and got lost on the way to Jaunty.

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