I have the same issue. its so annoying trying to figure out where in the
long document I was editing at after coming back to the gedit window. I
couldn't figure out what caused the jumpy scrolling, I just thought it
was random. thanks for making it clear.

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You received this bug notification because you are a member of Desktop
Packages, which is subscribed to gedit in Ubuntu.
https://bugs.launchpad.net/bugs/1089966

Title:
  Gedit scrolling jumps to wrong location after re-focusing on window
  and scrolling mouse wheel slightly

Status in “gedit” package in Ubuntu:
  Confirmed

Bug description:
  While Gedit application is open, switch to another application which
  allows mouse wheel scrolling, such as Chromium web browser, or
  Firefox, or LibreOffice Writer.  Use mouse wheel to scroll up or down
  in the web browser.  Switch back to Gedit and nudge the mouse wheel
  slightly.  The Gedit window seems to be saving all mouse wheel
  scrolling commands from the mouse wheel while in Chromium and applying
  them to the Gedit window, causing the scrolling to jump to the wrong
  location in the document.  If I scroll up in Chromium, then switch to
  Gedit and scroll down in Gedit, it will instead scroll up by the same
  amount that I scrolled up in Chromium.  Gedit ignores the command from
  the mouse wheel and applies the scroll activity from the previous
  window instead.  This bug does not seem to be affecting other
  applications which uses mouse scrolling.  Chromium, Firefox, and
  LibreOffice Writer all work fine and do not jump.  Only Gedit jumps to
  the wrong location on returning to the window and nudging the mouse
  wheel slightly.

  ProblemType: Bug
  DistroRelease: Ubuntu 12.04
  Package: gedit 3.4.1-0ubuntu1
  ProcVersionSignature: Ubuntu 3.2.0-34.53-generic 3.2.33
  Uname: Linux 3.2.0-34-generic x86_64
  ApportVersion: 2.0.1-0ubuntu15
  Architecture: amd64
  Date: Thu Dec 13 09:33:59 2012
  ExecutablePath: /usr/bin/gedit
  InstallationMedia: Ubuntu 12.04.1 LTS "Precise Pangolin" - Release amd64 
(20120822.4)
  MarkForUpload: True
  ProcEnviron:
   PATH=(custom, no user)
   LANG=en_US.UTF-8
   SHELL=/bin/bash
  SourcePackage: gedit
  UpgradeStatus: No upgrade log present (probably fresh install)

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