Please try the following workaround:
Completely close Thunderbird.
Edit the user.js file in you Thunderbird profile folder(by default should be 
located at ~/.thunderbird/xxxxxx.default), it probably does not exist so create 
the file.
Insert the following lines:
user_pref("network.protocol-handler.app.http", "/usr/bin/firefox");
user_pref("network.protocol-handler.app.https", "/usr/bin/firefox");
user_pref("network.protocol-handler.app.ftp", "/usr/bin/firefox");
Restart thunderbird and see if this is fixed.
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** Changed in: thunderbird (Ubuntu)
       Status: New => Incomplete

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You received this bug notification because you are a member of Desktop
Packages, which is subscribed to thunderbird in Ubuntu.
https://bugs.launchpad.net/bugs/880834

Title:
  URLs in message body not opening in browser

Status in “thunderbird” package in Ubuntu:
  Incomplete

Bug description:
  When a message contains URLs, thunderbird successfully identifies and
  shows them as blue, underlined text.  However, when they are clicked
  on with the mouse, they do not launch a browser or even open a new tab
  in an already open browser.  I would expect that blue, underlined URLs
  in the body of a message would open in the browser.

  $ apt-cache policy thunderbird
  thunderbird:
    Installed: 7.0.1+build1+nobinonly-0ubuntu1
    Candidate: 7.0.1+build1+nobinonly-0ubuntu1
    Version table:
   *** 7.0.1+build1+nobinonly-0ubuntu1 0
          500 http://fi.archive.ubuntu.com/ubuntu/ oneiric/main amd64 Packages
          100 /var/lib/dpkg/status

  $ lsb_release -rd
  Description:  Ubuntu 11.10
  Release:      11.10

To manage notifications about this bug go to:
https://bugs.launchpad.net/ubuntu/+source/thunderbird/+bug/880834/+subscriptions

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