I had the same issue and this workaround worked for me:
sudo tee /usr/local/bin/thunderbird << EOF
#!/bin/bash
[[ "\${GPG_AGENT_INFO}" =~ ^"\${GNOME_KEYRING_CONTROL}" ]] || export
GPG_AGENT_INFO="\${GNOME_KEYRING_CONTROL}/gpg:0:1"
exec /usr/bin/thunderbird "\$@"
EOF
sudo chmod 0755 /usr/local/bin/thunderbird
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https://bugs.launchpad.net/bugs/1243169
Title:
Thunderbird Enigmail cannot see GPG agent in Gnome Keyring
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