I can confirm this bug too. But it does not happen everytime, just from
time to time.

My System:
OS: Ubuntu 13.10 saucy
Kernel: x86_64 Linux 3.11.0-20-generic
Gnome 3.9.90
WM: GNOME Shell
GTK Theme: Adwaita [GTK2], Adwaita [GTK3]
CPU: Intel Core i5 CPU M 430 @ 2.267GHz
GPU: GeForce GTS 250M
DRIVER: nvidia-304

I'll try to find something interesting in the logs and append it if it
occurs the next time.

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https://bugs.launchpad.net/bugs/1315425

Title:
  Cannot shutdown or reboot system from Gnome or gnome-terminal

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