I also get this bug on a newly installed 12.4 with Seagate ST2000DM001
drives.  Reported misalignment is 3072 bytes.  Both drives work and pass
all diagnostics, but average seek time is 14.2 to 14.4 ms.

based on question 184477 I ran 
sudo fdisk -l; mount; echo; lsb_release -a; uname -a
and got

WARNING: GPT (GUID Partition Table) detected on '/dev/sdc'! The util
fdisk doesn't support GPT. Use GNU Parted.


Disk /dev/sdc: 2000.4 GB, 2000398934016 bytes
255 heads, 63 sectors/track, 243201 cylinders, total 3907029168 sectors
Units = sectors of 1 * 512 = 512 bytes
Sector size (logical/physical): 512 bytes / 4096 bytes
I/O size (minimum/optimal): 4096 bytes / 4096 bytes
Disk identifier: 0x00000000

   Device Boot      Start         End      Blocks   Id  System
/dev/sdc1               1  3907029167  1953514583+  ee  GPT
Partition 1 does not start on physical sector boundary.

WARNING: GPT (GUID Partition Table) detected on '/dev/sdb'! The util
fdisk doesn't support GPT. Use GNU Parted.


Disk /dev/sdb: 2000.4 GB, 2000398934016 bytes
255 heads, 63 sectors/track, 243201 cylinders, total 3907029168 sectors
Units = sectors of 1 * 512 = 512 bytes
Sector size (logical/physical): 512 bytes / 4096 bytes
I/O size (minimum/optimal): 4096 bytes / 4096 bytes
Disk identifier: 0x00000000

   Device Boot      Start         End      Blocks   Id  System
/dev/sdb1               1  3907029167  1953514583+  ee  GPT
Partition 1 does not start on physical sector boundary.
/dev/sda1 on / type ext4 (rw,errors=remount-ro)
proc on /proc type proc (rw,noexec,nosuid,nodev)
sysfs on /sys type sysfs (rw,noexec,nosuid,nodev)
none on /sys/fs/fuse/connections type fusectl (rw)
none on /sys/kernel/debug type debugfs (rw)
none on /sys/kernel/security type securityfs (rw)
udev on /dev type devtmpfs (rw,mode=0755)
devpts on /dev/pts type devpts (rw,noexec,nosuid,gid=5,mode=0620)
tmpfs on /run type tmpfs (rw,noexec,nosuid,size=10%,mode=0755)
none on /run/lock type tmpfs (rw,noexec,nosuid,nodev,size=5242880)
none on /run/shm type tmpfs (rw,nosuid,nodev)
gvfs-fuse-daemon on /home/nas/.gvfs type fuse.gvfs-fuse-daemon 
(rw,nosuid,nodev,user=nas)
/dev/sdc1 on /media/2TB type ext4 (rw,nosuid,nodev,uhelper=udisks)
/dev/sdb1 on /media/2TA type ext4 (rw,nosuid,nodev,uhelper=udisks)

No LSB modules are available.
Distributor ID: Ubuntu
Description:    Ubuntu 12.04 LTS
Release:        12.04
Codename:       precise
Linux nas 3.2.0-27-generic-pae #43-Ubuntu SMP Fri Jul 6 15:06:05 UTC 2012 i686 
i686 i386 GNU/Linux

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https://bugs.launchpad.net/bugs/742123

Title:
  creates a misaligned partition

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