Investigating further, I think the bug is in gnome-session which have
had some changes to set the http_proxy environment variable according to
the gconf settings - this however interferes with gnome-terminal's idea
that if the environment variable is set it should obey this.

The root of the problem is that gnome-session assumes the proxy settings to be 
constant during the session (because the environment is inherited by child 
processes, and cannot be changed), which is not true.
Maybe these changes should be backed out of gnome-session, as gnome-terminal 
already handles it?
Also see gnome bug #84315

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http_proxy defined incorrectly
https://launchpad.net/bugs/78098

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