I have been experiencing this same problem for several months now.  It always 
starts out as a sudden, dramatic increase in the amount of time that it takes 
to simulate the AI players moves after I click the "Turn Done" button (CPU is 
always pegged at 100% when this happens).  After that point, scrolling around 
the map or anything else that requires redrawing a significant portion of the 
screen lags terribly and will peg the CPU at 100% for brief periods of time.  
Fairly soon after this happens, I see the same behavior that Phillip reported 
with the desktop suddenly reverting to a default theme and set of icons.  
Running the following script usually brings all of the icons and widgets back 
to the normal theme:
  killall gnome-settings-daemon
  gnome-settings-daemon &
  killall nautilus
This is usually only temporary, and after 10-15 minutes I'll get dumped back to 
the default theme again.  Completely restarting the X server will usually 
prevent the problem from resurfacing for an hour or so, but it only delays the 
inevitable.

I have also had this problem occur while running nothing but Firefox,
but the vast majority of the time I see this problem is when I'm running
Freeciv.

I modified my script to save a copy of .xsession-errors when it tries to
restart gnome-settings-daemon.  I'll attach it to this ticket in case it
contains anything useful.  Is there anything else I can provide to help
debug this issue?

** Attachment added: ".xsession-errors log showing additional information"
   
https://bugs.launchpad.net/ubuntu/+source/gnome-settings-daemon/+bug/751163/+attachment/2533960/+files/.xsession-errors.bak

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https://bugs.launchpad.net/bugs/751163

Title:
  gnome-settings-daemon crashes during use

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