Confirmed here.

Opening a nautilus window via glx-dock fails on the first attempt,
succeeds on the second.

Similarly, opening firefox for the first time via glx-dock fails on the
first attempt, works on the second attempt, but also gives the error
message:

"Firefox is already running, but is not responding. To open a new
window, you must first close the existing Firefox process, or restart
your system."

gvfs is used by glx-dock to open firefox and nautilus windows.

Distibution: Ubuntu 10.1
Installed gvfs is:
1.6.4-0ubuntu1.1 (maverick-updates)
1.6.4-0ubuntu1 (maverick)

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https://bugs.launchpad.net/bugs/701499

Title:
  Nautilus doesn't start at first clics on Cairo-Dock applets

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