I don't know for the touchpad, but it is simple to reproduce the problem
for a normal mouse on the current karmic:

Simply open the configuration editor and activate the left_handed gconf
key and click with the left mouse button some item: the contextual menu
does not appear, but the item gets selected as if a primary click
occurred instead of a secondary click.

However, if I used the Mouse control panel instead of the configuration
editor to activate the left handedness of the mouse, the problem does
not occur.

Finally, I have been told that the problem is fixed in some 2.29.x
version in GNOME, but for the moment I have not been able to verify it
with Ubuntu lucid, as lucid does not start up properly here.

-- 
Left handed mouse settings no longer working after system update
https://bugs.launchpad.net/bugs/426675
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