After playing around with the US mount options in my jaunty 64, I still
see this issue.

In my case, I think this is the result of using ubuntu on an NTFS USB drive: If 
I copy and delete large files (4-8GB) in Jaunty, the USB drive gets fragmented 
(expectedly so).  If I plug this device to my Windows box, it is defragmented 
by default (in vista or 7).
When I use Jaunty again to copy large files, I don't see this problem again.

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file transfers on USB disk are very slow
https://bugs.launchpad.net/bugs/197762
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