It seems to be a bug in the greek layout file in /etc/X11/xkb/symbols/gr. 
Following the hint in http://www.jw-stumpel.nl/stestu.html#T6.5.3 I changed the 
lines 
key <AC10> { [  dead_acute,  dead_horn   ] };
key <AC11> { [  dead_grave,  dead_ogonek ] };
 to 
key <AC10> { [  dead_acute,  U0313   ] };
key <AC11> { [  dead_grave,  U0314   ] };
and writing psili and dasia is working again.

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xkb greek polytonic: cannot write psili and dasia after upgrade to breezy
https://launchpad.net/bugs/21637

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