I've been doing some research on this:

The reason the build-conflict was introduced in the debian-package was a
solution to http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=407800,
where seahorse-agent would crash on startup with gnupg-agent running.
The developers since fixed this issue, see
http://bugzilla.gnome.org/show_bug.cgi?id=454469. Thus the build-
conflicts is no longer needed, yet remained in our package.

I tested a built without the build-conflict and seahorse and seahorse-
agent work fine, except for the issue described in bug #217270, which
happens when gpg-agent is started before seahorse-agent.

-- 
unbuildable due to fix for bug 305565
https://bugs.launchpad.net/bugs/346591
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