Have just installed Intrepid and applied the latest software upgrades.
With kernel 2.6.27-9 I get bad transfer rates (round 1000 kB/s), but
booting 2.6.27-7 I get normal rates (> 20 MB/s).

I think we can conclude it's a kernel issue. Don't you?

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file transfers on USB disk are very slow
https://bugs.launchpad.net/bugs/197762
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