I see there's some code in /etc/init.d/gdm to do with killing usplash
and switching terminals, and I wonder if that is related to the problem.
It would account for why it's only occurring at initial startup.
** Changed in: gdm (Ubuntu)
Status: Incomplete => Confirmed
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mouse and keyboard unresponsive when gdm first runs
https://bugs.launchpad.net/bugs/271138
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