Thanks... so it doesn't get the correct mimetypes for some reason.

Could you please call
grep -R "x-extension" ~/.local/share/mime
and paste the output here?
I have the bad feeling that you already assigned a mimetype to files with those 
extensions for your user which then overrides the system settings.

-- 
Some audio files have wrong icons
https://launchpad.net/bugs/41285

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