Thanks for your bug. What version of Ubuntu do you use. Do you have an example 
of application to run to trigger the issue quickly? Could you get a backtrace 
when that happens using gdb:
- gdb $(pidof wnck-applet) 
(gdb) thread apply all bt

** Changed in: gnome-panel (Ubuntu)
     Assignee: (unassigned) => Ubuntu Desktop Bugs
       Status: Unconfirmed => Needs Info
-- 
wnck-applet consumes all cpu when using motif applications
https://launchpad.net/malone/bugs/36928

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