Your message dated Tue, 16 Nov 2021 18:00:10 +0000
with message-id <e1mn2kc-000hxz...@fasolo.debian.org>
and subject line Bug#991277: fixed in cutesv 1.0.11-1
has caused the Debian Bug report #991277,
regarding ITP: cutesv -- comprehensive discovery of structural variations of
genomic sequences
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
991277: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=991277
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Subject: ITP: cutesv -- comprehensive discovery of structural variations of
genomic sequences
Package: wnpp
Owner: Steffen Moeller <moel...@debian.org>
Severity: wishlist
* Package name : cutesv
Version : 1.0.11
Upstream Author : JiangTao
* URL : https://github.com/tjiangHIT/cuteSV
* License : MIT
Programming Lang: Python
Description : comprehensive discovery of structural variations of genomic
sequences
Long-read sequencing enables the comprehensive discovery of structural
variations (SVs). However, it is still non-trivial to achieve high
sensitivity and performance simultaneously due to the complex SV
characteristics implied by noisy long reads.
.
cuteSV is a sensitive, fast and scalable long-read-based SV detection
approach. cuteSV uses tailored methods to collect the signatures of
various types of SVs and employs a clustering-and-refinement method to
analyze the signatures to implement sensitive SV detection. Benchmarks
on real Pacific Biosciences (PacBio) and Oxford Nanopore Technology
(ONT) datasets demonstrate that cuteSV has better yields and scalability
than state-of-the-art tools.
Remark: This package is maintained by Debian Med Packaging Team at
https://salsa.debian.org/med-team/cutesv
--- End Message ---
--- Begin Message ---
Source: cutesv
Source-Version: 1.0.11-1
Done: Andreas Tille <ti...@debian.org>
We believe that the bug you reported is fixed in the latest version of
cutesv, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 991...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated cutesv package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sat, 22 May 2021 08:48:12 +0200
Source: cutesv
Binary: cutesv
Architecture: source all
Version: 1.0.11-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
cutesv - comprehensive discovery of structural variations of genomic seque
Closes: 991277
Changes:
cutesv (1.0.11-1) unstable; urgency=medium
.
* Initial release (Closes: #991277)
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