Package: wnpp Severity: wishlist Subject: ITP: bio-vcf -- domain specific language (DSL) for processing the VCF format Package: wnpp Owner: Andreas Tille <ti...@debian.org> Severity: wishlist
* Package name : bio-vcf Version : 0.9.5 Upstream Author : Pjotr Prins <pjotr.publi...@thebird.nl> * URL : https://rubygems.org/gems/bio-vcf/ * License : MIT Programming Lang: (C, C++, C#, Perl, Python, etc.) Description : domain specific language (DSL) for processing the VCF format Bio-vcf provides a domain specific language (DSL) for processing the VCF format. Record named fields can be queried with regular expressions, e.g. . sample.dp>20 and rec.filter !~ /LowQD/ and rec.tumor.bcount[rec.alt]>4 . Bio-vcf is a new generation VCF parser, filter and converter. Bio-vcf is not only very fast for genome-wide (WGS) data, it also comes with a really nice filtering, evaluation and rewrite language and it can output any type of textual data, including VCF header and contents in RDF and JSON. Remark: This package is maintained by Debian Med Packaging Team at https://salsa.debian.org/med-team/bio-vcf
