Your message dated Mon, 20 Jul 2020 11:00:09 +0000
with message-id <e1jxtwj-000for...@fasolo.debian.org>
and subject line Bug#962057: fixed in covtobed 1.1.2+dfsg-1
has caused the Debian Bug report #962057,
regarding ITP: covtobed -- convert the coverage track from a BAM file into a
BED file
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
962057: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=962057
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Subject: ITP: covtobed -- convert the coverage track from a BAM file into a BED
file
Package: wnpp
Owner: Shayan Doust <he...@shayandoust.me>
Severity: wishlist
* Package name : covtobed
Version : 1.1.2
Upstream Author : Giovanni Birolo and Andrea Telatin
* URL : https://github.com/telatin/covtobed
* License : Expat
Programming Lang: C
Description : convert the coverage track from a BAM file into a BED file
Reads one (or more) alignment files (sorted BAM) and prints a BED with
the coverage. It will join consecutive bases with the same coverage, and
can be used to only print a BED file with the regions having a specific
coverage range.
Remark: This package is maintained by Debian Med Packaging Team at
https://salsa.debian.org/med-team/covtobed
--- End Message ---
--- Begin Message ---
Source: covtobed
Source-Version: 1.1.2+dfsg-1
Done: Shayan Doust <he...@shayandoust.me>
We believe that the bug you reported is fixed in the latest version of
covtobed, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 962...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Shayan Doust <he...@shayandoust.me> (supplier of updated covtobed package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sat, 30 May 2020 18:45:28 +0100
Source: covtobed
Binary: covtobed covtobed-dbgsym covtobed-examples
Architecture: source amd64 all
Version: 1.1.2+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Shayan Doust <he...@shayandoust.me>
Description:
covtobed - convert the coverage track from a BAM file into a BED file
covtobed-examples - example data and scripts for mindthegap
Closes: 962057
Changes:
covtobed (1.1.2+dfsg-1) unstable; urgency=medium
.
* Initial release (Closes: #962057)
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--- End Message ---
