Got it, thanks! I have enabled the pipeline in one fork https://salsa.debian.org/zhaofeng-shu33-guest/python-ete3/-/pipelines/153000 and I think the build error does not exist any more.
> I also thin checking the DeprecationWarnings might be worth investigating. This may be related with some upstream code problem. Do you think it is necessary to write patches for test warning? > Regarding the tests your way in d/rules looks better now. However, what > is the motivation to exclude skbio? I haven't noticed that `python3-skbio` is available in testing. Now it is added back. > Finally I'm wondering whether the binary package should be rather > Architecture: all . Done On Sun, Jul 5, 2020 at 6:36 PM Andreas Tille <andr...@an3as.eu> wrote: > > Hi, > > On Sun, Jul 05, 2020 at 06:13:36PM +0800, zhao feng wrote: > > I have merged the work into https://salsa.debian.org/med-team/python-ete3 > > Thanks a lot for the merge. I was running routine-update to modernise > packaging on it and added you to Uploaders (I guess Alba is lacking > time for that package so its better to have your ID here as well). > > Unfortunately the build time test is running into a failure: > > > dh_auto_test > I: pybuild base:217: cd > /build/python-ete3-3.1.1+dfsg/.pybuild/cpython3_3.8_ete3/build; python3.8 -m > pytest -k "not test_ncbiquery and not test_skbio and not test_ncbi_compare > and not test_get_topology and not test_01tree_annotation and not > test_00_update_database and not test_renderer" ete3/test/test_api.py > ============================= test session starts > ============================== > platform linux -- Python 3.8.4rc1, pytest-4.6.11, py-1.8.1, pluggy-0.13.0 > rootdir: /build/python-ete3-3.1.1+dfsg > collected 0 items / 1 errors > > ==================================== ERRORS > ==================================== > ___ ERROR collecting .pybuild/cpython3_3.8_ete3/build/ete3/test/test_api.py > ____ > ImportError while importing test module > '/build/python-ete3-3.1.1+dfsg/.pybuild/cpython3_3.8_ete3/build/ete3/test/test_api.py'. > Hint: make sure your test modules/packages have valid Python names. > Traceback: > ete3/test/test_api.py:17: in <module> > from .test_treeview.test_all_treeview import * > ete3/test/test_treeview/test_all_treeview.py:10: in <module> > from ... import Tree, TreeStyle, NodeStyle, PhyloTree, faces, random_color > E ImportError: cannot import name 'TreeStyle' from 'ete3' > (/build/python-ete3-3.1.1+dfsg/.pybuild/cpython3_3.8_ete3/build/ete3/__init__.py) > ------------------------------- Captured stdout > -------------------------------- > /build/python-ete3-3.1.1+dfsg/.pybuild/cpython3_3.8_ete3/build/bin/ > =============================== warnings summary > =============================== > ete3/coretype/tree.py:363 > > /build/python-ete3-3.1.1+dfsg/.pybuild/cpython3_3.8_ete3/build/ete3/coretype/tree.py:363: > DeprecationWarning: invalid escape sequence \- > """ > > ete3/coretype/tree.py:434 > > /build/python-ete3-3.1.1+dfsg/.pybuild/cpython3_3.8_ete3/build/ete3/coretype/tree.py:434: > DeprecationWarning: invalid escape sequence \- > """Prunes the topology of a node to conserve only the selected list of > leaf > ... > ete3/phylomedb/phylomeDB3.py:757 > > /build/python-ete3-3.1.1+dfsg/.pybuild/cpython3_3.8_ete3/build/ete3/phylomedb/phylomeDB3.py:757: > DeprecationWarning: invalid escape sequence \w > QUERY_OLD_REGEXP_FILTER = "^\w{3}\d{1,}$" > > ete3/phylomedb/phylomeDB3.py:758 > > /build/python-ete3-3.1.1+dfsg/.pybuild/cpython3_3.8_ete3/build/ete3/phylomedb/phylomeDB3.py:758: > DeprecationWarning: invalid escape sequence \w > QUERY_INT_REGEXP_FILTER = "^[Pp][Hh][Yy]\w{7}(_\w{2,7})?$" > > -- Docs: https://docs.pytest.org/en/latest/warnings.html > !!!!!!!!!!!!!!!!!!! Interrupted: 1 errors during collection > !!!!!!!!!!!!!!!!!!!! > ===================== 41 warnings, 1 error in 0.93 seconds > ===================== > E: pybuild pybuild:352: test: plugin distutils failed with: exit code=2: cd > /build/python-ete3-3.1.1+dfsg/.pybuild/cpython3_3.8_ete3/build; python3.8 -m > pytest -k "not test_ncbiquery and not test_skbio and not test_ncbi_compare > and not test_get_topology and not test_01tree_annotation and not > test_00_update_database and not test_renderer" ete3/test/test_api.py > dh_auto_test: error: pybuild --test -i python{version} -p 3.8 returned exit > code 13 > > > I also thin checking the DeprecationWarnings might be worth investigating. > > Regarding the tests your way in d/rules looks better now. However, what > is the motivation to exclude skbio? > > Finally I'm wondering whether the binary package should be rather > Architecture: all . > > Kind regards and thanks so far for your work on this > > Andreas. > > -- > http://fam-tille.de
