Package: wnpp Severity: wishlist Subject: ITP: plasmidid -- mapping-based, assembly-assisted plasmid identification tool Package: wnpp Owner: Steffen Moeller <moel...@debian.org> Severity: wishlist
* Package name : plasmidid Version : 1.6.3 Upstream Author : Luis Sian, Miguel Julia, Pedro Scampoy, Sara Monzón * URL : https://github.com/BU-ISCIII/plasmidID * License : GPL-3 Programming Lang: Python Description : mapping-based, assembly-assisted plasmid identification tool PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification. . PlasmidID is a computational pipeline that maps Illumina reads over plasmid database sequences. The k-mer filtered, most covered sequences are clustered by identity to avoid redundancy and the longest are used as scaffold for plasmid reconstruction. Reads are assembled and annotated by automatic and specific annotation. All information generated from mapping, assembly, annotation and local alignment analyses is gathered and accurately represented in a circular image which allow user to determine plasmidic composition in any bacterial sample. Remark: This package is maintained by Debian Med Packaging Team at https://salsa.debian.org/med-team/plasmidid
