Package: wnpp Severity: wishlist Owner: Nilesh Patra <npatra...@gmail.com> X-Debbugs-CC: debian-de...@lists.debian.org
* Package name : ngmlr Version : 0.2.7 Upstream Author : Philipp Rescheneder * URL : https://github.com/philres/ngmlr <https://github.com/knsv/mermaid> * License : Expat Programming Lang: C++ Description : CoNvex Gap-cost alignMents for Long Reads ngmlr is a long-read mapper designed to sensitively align PacBilo or Oxford Nanopore to (large) reference genomes. It was designed to quickly and correctly align the reads, including those spanning (complex) structural variations. Ngmlr uses an SV aware k-mer search to find approximate mapping locations for a read and then a banded Smith-Waterman alignment algorithm to compute the final alignment. Ngmlr uses a convex gap cost model that penalizes gap extensions for longer gaps less than for shorter ones to compute precise alignments. I take the responsibility to maintain this package.
