Your message dated Wed, 27 May 2020 11:00:09 +0000
with message-id <e1jdtn7-0007pk...@fasolo.debian.org>
and subject line Bug#960509: fixed in ivar 1.2.2+dfsg-1
has caused the Debian Bug report #960509,
regarding ITP: ivar -- functions broadly useful for viral amplicon-based
sequencing
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
960509: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=960509
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Subject: ITP: ivar -- functions broadly useful for viral amplicon-based
sequencing
Package: wnpp
Owner: Andreas Tille <ti...@debian.org>
Severity: wishlist
* Package name : ivar
Version : 1.2.2
Upstream Author : Nathan D. Grubaugh, Karthik Gangavarapu
* URL : https://github.com/andersen-lab/ivar
* License : GPL-3+
Programming Lang: C
Description : functions broadly useful for viral amplicon-based sequencing
iVar is a computational package that contains functions broadly useful
for viral amplicon-based sequencing. Additional tools for metagenomic
sequencing are actively being incorporated into iVar. While each of
these functions can be accomplished using existing tools, iVar contains
an intersection of functionality from multiple tools that are required
to call iSNVs and consensus sequences from viral sequencing data across
multiple replicates. iVar provided the following functions:
.
1. trimming of primers and low-quality bases,
2. consensus calling,
3. variant calling - both iSNVs and insertions/deletions, and
4. identifying mismatches to primer sequences and excluding the
corresponding reads from alignment files.
Remark: This package is maintained by Debian Med Packaging Team at
https://salsa.debian.org/med-team/ivar
--- End Message ---
--- Begin Message ---
Source: ivar
Source-Version: 1.2.2+dfsg-1
Done: Andreas Tille <ti...@debian.org>
We believe that the bug you reported is fixed in the latest version of
ivar, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 960...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated ivar package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 13 May 2020 14:51:11 +0200
Source: ivar
Binary: ivar ivar-dbgsym ivar-doc
Architecture: source amd64 all
Version: 1.2.2+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
ivar - functions broadly useful for viral amplicon-based sequencing
ivar-doc - functions broadly useful for viral amplicon-based sequencing (doc
Closes: 960509
Changes:
ivar (1.2.2+dfsg-1) unstable; urgency=medium
.
* Initial release (Closes: #960509)
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--- End Message ---
