Package: wnpp Severity: wishlist Subject: ITP: tiddit -- structural variant calling Package: wnpp Owner: Andreas Tille <ti...@debian.org> Severity: wishlist
* Package name : tiddit Version : 2.11.0 Upstream Author : Francesco Vezzi <francesco.ve...@scilifelab.se>, * URL : https://github.com/SciLifeLab/TIDDIT * License : GPL-3 Programming Lang: C Description : structural variant calling TIDDIT is a tool to used to identify chromosomal rearrangements using Mate Pair or Paired End sequencing data. TIDDIT identifies intra and inter- chromosomal translocations, deletions, tandem-duplications and inversions, using supplementary alignments as well as discordant pairs. . TIDDIT has two analysis modules. The sv mode, which is used to search for structural variants. And the cov mode that analyse the read depth of a bam file and generates a coverage report. Remark: This package is maintained by Debian Med Packaging Team at https://salsa.debian.org/med-team/tiddit
