Package: wnpp Severity: wishlist Subject: ITP: libbio-db-hts-perl -- Perl interface to the HTS library Package: wnpp Owner: Andreas Tille <ti...@debian.org> Severity: wishlist
* Package name : libbio-db-hts-perl Version : 3.01 Upstream Author : EMBL-European Bioinformatics Institute * URL : https://metacpan.org/release/Bio-DB-HTS * License : Apache-2.0 Programming Lang: C Description : Perl interface to the HTS library HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang. . HTSlib implements a generalized BAM (binary SAM) index, with file extension 'csi' (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent. . This package provides a Perl interface to the HTS library. Remark: This package is maintained by Debian Med Packaging Team at https://salsa.debian.org/med-team/libbio-db-hts-perl
