Package: wnpp Severity: wishlist Subject: ITP: mmseqs2 -- ultra fast and sensitive protein search and clustering. Package: wnpp Owner: Shayan Doust <[email protected]> Severity: wishlist
* Package name : mmseqs2 Version : 9 Upstream Author : Söding Lab <https://mpibpc.mpg.de/soeding> * URL : https://github.com/soedinglab/MMseqs2 * License : GPLv3 Programming Lang: C Description : ultra fast and sensitive protein search and clustering. MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge proteins/nucleotide sequence sets. MMseqs2 is open source GPL-licensed software implemented in C++ for Linux, MacOS, and (as beta version, via cygwin) Windows. The software is designed to run on multiple cores and servers and exhibits very good scalability. MMseqs2 can run 10000 times faster than BLAST. At 100 times its speed it achieves almost the same sensitivity. It can perform profile searches with the same sensitivity as PSI-BLAST at over 400 times its speed. Remark: This package is maintained by Debian Med Packaging Team at https://salsa.debian.org/med-team/mmseqs2
