Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org>
Package name: chromhmm URL: http://compbio.mit.edu/ChromHMM/ License: GPL-3+ Description: Chromatin state discovery and characterization ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modifications to discover de novo the major re-occuring combinatorial and spatial patterns of marks. ChromHMM is based on a multivariate Hidden Markov Model that explicitly models the presence or absence of each chromatin mark. The resulting model can then be used to systematically annotate a genome in one or more cell types. By automatically computing state enrichments for large-scale functional and annotation datasets ChromHMM facilitates the biological characterization of each state. ChromHMM also produces files with genome-wide maps of chromatin state annotations that can be directly visualized in a genome browser. This package will be maintained by the Debian Med Packaging Team at: https://salsa.debian.org/med-team/chromhmm.git/
