Your message dated Thu, 06 Apr 2017 08:00:10 +0000
with message-id <e1cw2kw-0005ib...@fasolo.debian.org>
and subject line Bug#859196: fixed in pftools 3+dfsg-1
has caused the Debian Bug report #859196,
regarding ITP: pftools -- build and search protein and DNA generalized profiles
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
859196: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=859196
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <ti...@debian.org>
* Package name : pftools
Version : 3
Upstream Author : Alan Bridge, Christian Sigrist, Gregoire Rossier
* URL : http://web.expasy.org/pftools/
* License : GPL
Programming Lang: C
Description : build and search protein and DNA generalized profiles
The pftools package contains all the software necessary to build protein
and DNA generalized profiles and use them to scan and align sequences,
and search databases.
.
File formats used by the pftools
* Generalized profiles format and syntax.
* The multiple sequence alignment format (PSA).
* The extended header multiple sequence alignment format (XPSA).
.
Programs to build generalized profiles
pfmake
Build a profile from a multiple sequence alignment.
pfscale
Fit parameters of an extreme-value distribution to a profile score list.
pfw
Weight sequences of a multiple sequence alignment to correct for
sampling bias.
.
Programs to search with generalized profiles
pfsearch
Search a protein or DNA sequence library for sequence segments matching
a profile.
pfscan
Scan a protein or DNA sequence with a profile library
.
Conversion programs
psa2msa
Reformat PSA file to Pearson/Fasta multiple sequence alignment file.
ptof
Convert a protein profile into a frame-search profile to search DNA
sequences. To be used with 2ft.
2ft
Converts both strands of DNA into so-called interleaved
frame-translated DNA sequences to search with protein profiles. To be
used with ptof.
6ft
Translates all six reading frames of a double-stranded DNA sequence
into individual protein sequences.
pfgtop
Convert a profile in GCG format into PROSITE format.
pfhtop
Convert a HMMER1 ASCII-formatted HMM into an equivalent PROSITE profile.
ptoh
Converts a generalized profile into an approximately equivalent HMM
profile in HMMER1 format (can be read by the hmmconvert program from
the HMMER2 package).
Remark: This package will be maintained by the Debian Med team at
https://anonscm.debian.org/git/debian-med/pftools.git
--- End Message ---
--- Begin Message ---
Source: pftools
Source-Version: 3+dfsg-1
We believe that the bug you reported is fixed in the latest version of
pftools, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 859...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated pftools package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 31 Mar 2017 14:01:39 +0200
Source: pftools
Binary: pftools
Architecture: source amd64
Version: 3+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
pftools - build and search protein and DNA generalized profiles
Closes: 859196
Changes:
pftools (3+dfsg-1) unstable; urgency=medium
.
* Initial release (Closes: #859196)
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