On 03/03/2017 03:18 PM, Andreas Tille wrote: > Package: wnpp > Severity: wishlist > Owner: Andreas Tille <ti...@debian.org> > > * Package name : transit > Version : 2.0.2 > Upstream Author : Michael A. DeJesus, Chaitra Ambadipudi, and Thomas R. > Ioerger > * URL : > http://pythonhosted.org/tnseq-transit/transit_overview.html > * License : GPL > Programming Lang: Python > Description : statistical calculations of essentiality of genes or > genomic regions > This is a software that can be used to analyze Tn-Seq datasets. It > includes various statistical calculations of essentiality of genes or > genomic regions (including conditional essentiality between 2 > conditions). These methods were developed and tested as a collaboration > between the Sassetti lab (UMass) and the Ioerger lab (Texas A&M) > . > TRANSIT is capable of analyzing TnSeq libraries constructed with Himar1 > or Tn5 datasets. > . > TRANSIT assumes you have already done pre-processing of raw sequencing > files (.fastq) and extracted read counts into a .wig formatted file. > The .wig file should contain the counts at all sites where an insertion > could take place (including sites with no reads). For Himar1 datasets > this is all TA sites in the genome. For Tn5 datasets this would be all > nucleotides in the genome. > > > Remark: This package will be maintained by the Debian Med team at > https://anonscm.debian.org/cgit/debian-med/transit.git
Hi, The package name from upstream (as per the setup.py) is called "tnseq-transit" (see [1]). This looks a better package name to me than just "transit" which feels like a network protocol package. How about using tnseq-transit as a Debian package name then? Hoping this is a good suggestion, Cheers, Thomas Goirand (zigo) [1] https://github.com/mad-lab/transit/blob/master/setup.py#L28
