I just realized that Jmol may also need a transition, if we want to update the package properly. :(
It has these reverse dependencies: # Broken Depends: biojava3-live: libbiojava3.0-java biojava4-live: libbiojava4.0-java jalview: jalview # Broken Build-Depends: biojava3-live: libjmol-java biojava4-live: libjmol-java jalview: jmol-applet (>= 12.1.42) libjmol-java (>= 12.1.42) But somehow I think spending a lot of time working on Jmol would be too much of a distraction. Can we just bundle the stuff we need with sage?